Job Description P15042 Confidence 98.87% Date Thu Jan 5 11:34:23 GMT 2012 Rank 25 Aligned Residues 145 % Identity 19% Template c2vugB_ PDB info PDB header:ligase Chain: B: PDB Molecule:pab1020; PDBTitle: the structure of an archaeal homodimeric rna ligase Resolution 2.9 Å

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		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	I	T	S	N	V	R	T	I	R	A	I	P	L	K	L	H	G	E	N	I	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	F	E	K	I	N
Query Conservation
Alig confidence																											.							.															.	.							.	.																				.	.	.	.
Template Conservation																											.							.															.	.							.	.																				.	.	.	.
Template Sequence		K	R	G	E	F	Y	V	E	E	K	V	D	G	Y	N	V	R	V	V	M	Y	K	G	K	M	.	L	G	I	T	R	G	.	G	F	I	C	P	F	T	T	E	R	I	P	D	F	.	.	V	P	Q	E	F	F	.	.	K	D	N	P	N	L	I	L	V	G	E	M	A	G	P	E	S	P	Y	.	.	.	.
Template Known Secondary structure		S	S											S									T	T			.					T	T	.	S		B								G	G	G	T	.	.	S		T				.	.				T	T									S	S	S		S	S	.	.	.	.
Template Predicted Secondary structure																											.							.															.	.							.	.																				.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L	E	G	G	E	L	P	D	T	H	L	G	R	L	L	Q	F	K	K	W	G	L	P	V	S	D	.	.	R	V	T	L	C	E	S	A
Query Conservation																																																																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.																			.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	E	G	P	P	Y	V	K	E	D	I	Q	F	F	L	F	D	V	Q	E	I	K	T	G	R	S	L	.	P	V	E	E	R	L	K	I	A	E	E	Y	G	I	N	H	V	E	V	F	G	K	Y	T	K	D	D	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S				T	T			S	S											T	T	T			B		.													T			B									G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template SS confidence
																									156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K
Query Conservation
Alig confidence																		.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.
Template Sequence		D	E	L	Y	Q	L	I	E	R	L	S	K	E	G	R	E	.	.	.	.	.	.	G	I	I	M	K
Template Known Secondary structure														T	T			.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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