Job Description P15042 Confidence 97.00% Date Thu Jan 5 11:34:23 GMT 2012 Rank 76 Aligned Residues 146 % Identity 22% Template c2ihmA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide Resolution 2.40 Å

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		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.									.	.	.	.	.	.	.	.	510	.	.	.	.	.		.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.		.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.															.																	.
Query SS confidence																										.	.	.	.	.	.	.	.															.																	.
Query Sequence		T	A	G	K	L	T	G	L	E	R	M	G	P	K	S	A	Q	N	V	V	N	A	L	E	.	.	.	.	.	.	.	.	K	A	K	E	T	T	F	A	R	F	L	Y	A	L	.	G	I	R	E	V	G	E	A	T	A	A	G	L	A	A	Y	.	F	G	T	L	E	A	L	E	A	A	S	I	E	E	L	Q
Query Conservation																										.	.	.	.	.	.	.	.															.																	.
Alig confidence																										.	.	.	.	.	.	.	.															.																	.												.
Template Conservation																																																																													.
Template Sequence		S	L	S	Q	L	H	G	L	P	Y	F	G	E	H	S	T	R	V	I	Q	E	L	L	E	H	G	T	C	E	E	V	K	Q	V	R	C	S	E	R	Y	Q	T	M	K	L	F	T	Q	V	F	G	V	G	V	K	T	A	N	R	W	Y	Q	E	G	L	R	T	L	D	E	L	R	E	Q	P	.	Q	R	L	T
Template Known Secondary structure		S	G	G	G	G	T	T		T	T																S											S											T	S	T	T												T	T			S						T			.	T	T
Template Predicted Secondary structure																																																																													.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	P	D	V	G	I	V	V	A	S	H	V	H	N	F	F	A	E	E	S	N	R	N	V	I	S	E	L	L	A	E	G	V	H	W	P	A	P	I	V	I	N	A	E	E	I	D	S	P	F	A	G	K	T	V	V	L	T	G	S	L	S	Q	M	S	R	D	D	A	K	A	R	L	V	E	L	G	A	K
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	Q	Q	K	A	G	L	Q	Y	Y	Q	D	L	S	T	P	V	R	R	A	D	A	E	A	L	Q	Q	L	I	E	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	Q	T	L	P	G	A	T	V	T	L	T	G	G	F	R	R	G	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T						S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T		T	T											T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.															.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		628	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	G	S	V	S	K	K	T	D	L	V	I	A	G	E	A	A	G	S	K	L	A	K	A	Q	E	L
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	Q	G	H	D	V	D	F	L	I	T	H	P	E	E	G	Q	E	V	G	L	L	P	K	V
Template Known Secondary structure		.	.	.	.			S									S	S	T	T	T	T	T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions