Job Description P15042 Confidence 96.68% Date Thu Jan 5 11:34:23 GMT 2012 Rank 84 Aligned Residues 167 % Identity 17% Template c2hvsA_ PDB info PDB header:ligase/dna/rna Chain: A: PDB Molecule:t4 rna ligase 2; PDBTitle: structure of t4 rna ligase 2 with nicked 5'-adenylated2 nucleic acid duplex containing a 2'-deoxyribonucleotide at3 the nick Resolution 2.50 Å

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		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.											.	.	.	.	.	150
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	D	N	V	F	D	E	E	S	F	L	A	F	N	K	R	V	Q	D	R	L	K	N	N	E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	.	.	.	.	.	.	.	.	.	.	I	T	S	N	V	R
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		S	L	E	N	H	Y	N	S	K	F	I	E	K	L	Y	S	L	.	.	.	.	.	.	G	L	T	G	G	E	W	V	A	R	E	K	I	H	G	T	N	F	S	L	I	I	E	R	D	K	V	T	C	A	K	R	T	G	P	I	L	P	A	E	D	F	F	G	Y	E	I	I	L	K	N	Y	A	D	S	I	K
Template Known Secondary structure						T	T											T	.	.	.	.	.	.	T	T	T		S										S									S	S							T	T					T	T				T	T	T							T
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.							.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	R	A	I	P	L	K	L	H	G	E	N	I	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	F	E	K	I	N	E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L
Query Conservation
Alig confidence													.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	Q	D	I	M	E	T	S	A	V	.	.	.	.	V	S	Y	Q	V	F	G	E	F	A	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	Q	K	N	V	D	Y	G	D	K	D	F	Y	V	F	D	I	I	V	T
Template Known Secondary structure								T	T	T	T		.	.	.	.											S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S	S				S	S	S
Template Predicted Secondary structure													.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.																																	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		231	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.																									.
Predicted Secondary structure						.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	G	G	E	.	.	L	P	D	T	H	L	G	R	L	L	Q	F	K	K	W	G	L	P	V	S	D	R	V	T	L	C	E	S	A	E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I
Query Conservation						.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																										.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.
Template Sequence		T	E	S	G	D	V	T	Y	V	D	D	Y	M	M	E	S	F	C	N	T	F	K	F	K	M	A	P	L	L	G	R	.	G	K	F	E	E	L	I	K	L	P	N	D	L	D	S	V	V	Q	D	Y	N	F	T	V	D	H	A	G	L	V	D	A	N	K	C	V	W	N	A	E	A	K	G	E	V	F	T	A
Template Known Secondary structure			T	T																			T										.							T	T	S		T	T		B											T	T	T																S	S	S		B
Template Predicted Secondary structure																																	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		285	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	V	V	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	Y	V	L	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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