Job Description P15042 Confidence 98.92% Date Thu Jan 5 11:34:23 GMT 2012 Rank 24 Aligned Residues 213 % Identity 20% Template c2cfmA_ PDB info PDB header:ligase Chain: A: PDB Molecule:thermostable dna ligase; PDBTitle: atp-dependent dna ligase from pyrococcus furiosus Resolution 1.8 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		P	M	L	S	L	D	N	V	F	D	E	E	S	F	L	A	F	N	K	R	V	Q	D	R	L	K	N	N	E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	I	T	S	N	V	R	T	I	.	R	A	I	P
Query Conservation																																																																													.
Alig confidence						.													.	.	.	.	.	.	.	.	.	.	.																									.							.	.	.	.													.
Template Conservation						.													.	.	.	.	.	.	.	.	.	.	.																									.							.	.	.	.
Template Sequence		P	X	L	A	.	Q	Q	A	A	S	I	R	D	A	L	L	E	.	.	.	.	.	.	.	.	.	.	.	X	G	G	E	A	E	F	E	I	K	Y	D	G	A	R	V	Q	V	H	K	D	G	S	K	.	I	I	V	Y	S	R	.	.	.	.	R	L	E	N	V	T	R	A	I	P	E	I	V	E	A	L	K
Template Known Secondary structure						.				S									.	.	.	.	.	.	.	.	.	.	.	T	T	S										S									T	T		.						T	.	.	.	.	T			B		G	G	G
Template Predicted Secondary structure						.													.	.	.	.	.	.	.	.	.	.	.																									.							.	.	.	.
Template SS confidence
		224	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.												240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.					270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																										.	.	.	.	.
Query SS confidence																										.	.	.	.	.
Query Sequence		L	K	L	H	G	E	N	I	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	.	.	.	.	.	F	E	K	I	N	E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L	E
Query Conservation																										.	.	.	.	.
Alig confidence						.	.	.	.																	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	I	I	.	.	.	.	P	E	K	A	I	V	E	G	E	L	V	A	I	G	E	N	G	R	P	L	P	F	Q	Y	V	L	R	R	F	R	R	K	H	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	X	X	E	K	I	P	L	E	L	N	L	F	D	V	L	Y	V	D
Template Known Secondary structure				B		.	.	.	.	S	S											B		T	T	S	S	B			T											S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S													T
Template Predicted Secondary structure						.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		287	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.																		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		232		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.						260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure			.																												.	.	.	.	.
Query SS confidence			.																												.	.	.	.	.
Query Sequence		G	.	G	E	L	P	D	T	H	L	G	R	L	L	Q	F	K	K	W	G	L	P	V	S	D	R	V	T	L	.	.	.	.	.	C	E	S	A	E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K	V	N	S	L	A	Q	Q	E	Q	L	G	F	V	A	R
Query Conservation			.																												.	.	.	.	.
Alig confidence			.																		.										.	.	.	.	.																				.	.	.	.	.	.															.	.	.	.
Template Conservation																					.																																		.	.	.	.	.	.															.	.	.	.
Template Sequence		G	Q	S	L	I	D	T	K	F	I	D	R	R	R	T	L	E	E	I	.	I	K	Q	N	E	K	I	K	V	A	E	N	L	I	T	K	K	V	E	E	A	E	A	F	Y	K	R	A	L	E	X	G	H	.	.	.	.	.	.	E	G	L	X	A	K	R	L	D	A	V	Y	E	P	.	.	.	.	G	N	R
Template Known Secondary structure		T				T	T	S													.	B				S	S										S															T	T		.	.	.	.	.	.								T	T					T	.	.	.	.	T
Template Predicted Secondary structure																					.																																		.	.	.	.	.	.															.	.	.	.
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.							.	.	400	.	.	.	.	.	.	.	.	.	410	.					.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		A	P	R	W	A	V	A	F	K	F	P	A	Q	E	Q	M	T	F	V	R	D	V	E	F	Q	V	G	.	R	T	G	A	I	T	P	V
Query Conservation																													.
Alig confidence						.																							.
Template Conservation						.
Template Sequence		G	K	K	W	.	L	K	I	K	P	T	X	E	N	L	D	L	V	I	I	G	A	E	W	G	E	G	R	R	A	H	L	F	G	S	F
Template Known Secondary structure						.					S	S															S	G	G	G	T	T	S
Template Predicted Secondary structure						.
Template SS confidence
		415	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions