Job Description P15042 Confidence 98.81% Date Thu Jan 5 11:34:23 GMT 2012 Rank 26 Aligned Residues 222 % Identity 19% Template c1x9nA_ PDB info PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase i; PDBTitle: crystal structure of human dna ligase i bound to 5'-adenylated, nicked2 dna Resolution 3.00 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	L	S	L	D	N	V	F	D	E	E	S	F	L	A	F	N	K	R	V	Q	D	R	L	K	N	N	E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	I	T	S	N	V	R	T	I	R	A	I	P	L
Query Conservation
Alig confidence							.													.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation							.													.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Sequence		P	X	L	A	H	.	P	T	R	G	I	S	E	V	L	K	R	F	.	.	.	.	.	.	.	.	.	.	E	E	A	A	F	T	C	E	Y	K	Y	D	G	Q	R	A	Q	I	H	A	L	E	G	G	E	V	K	I	F	S	R	.	.	.	.	N	Q	E	D	N	T	G	K	Y	P	D	I	I	S	R	I	P
Template Known Secondary structure							.			S	S								T	.	.	.	.	.	.	.	.	.	.	T	T	S									S	S									T	T	S							T	.	.	.	.	T	S		B		T	T	T							T	S	G
Template Predicted Secondary structure							.													.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template SS confidence
		542	.	.	.	.		.	.	.	550	.	.	.	.	.	.	.	.											.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.					590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		K	L	H	G	E	N	I	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	F	E	K	I	N	E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L	E	G	.	G	E	L	P
Query Conservation																																																																													.
Alig confidence									.																.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Conservation									.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	K	L	P	S	V	.	T	S	F	I	L	D	T	E	A	V	A	W	D	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	Q	I	Q	P	F	Q	V	L	T	T	R	K	R	K	E	V	D	A	S	E	I	Q	V	Q	V	C	L	Y	A	F	D	L	I	Y	L	N	G	E	S	L	V	R
Template Known Secondary structure		G	G	B		T	T		.														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S	B							T	T	S		S	S				G	G	G			S													T	T				T	T
Template Predicted Secondary structure									.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		607	.	.	610	.	.	.		.	.	.	.	.	.	620	.	.	.	.	.	.	.	.														.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.						260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																									.	.	.	.	.																																	.
Query SS confidence																									.	.	.	.	.																																	.
Query Sequence		D	T	H	L	G	R	L	L	Q	F	K	K	W	G	L	P	V	S	D	R	V	T	L	.	.	.	.	.	C	E	S	A	E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K	V	.	N	S	L	A	Q	Q	E	Q	L	G	F	V	A	R	A	P	R	W	A
Query Conservation																									.	.	.	.	.																																	.
Alig confidence																									.	.	.	.	.																					.	.	.	.	.	.							.								.	.	.									.
Template Conservation																																																		.	.	.	.	.	.															.	.	.									.
Template Sequence		E	P	L	S	R	R	R	Q	L	L	R	E	N	F	V	E	T	E	G	E	F	V	F	A	T	S	L	D	T	K	D	I	E	Q	I	A	E	F	L	E	Q	S	V	K	D	S	C	E	.	.	.	.	.	.	G	L	X	V	K	T	L	D	V	D	A	T	Y	E	.	.	.	I	A	K	R	S	H	N	W	.
Template Known Secondary structure		S													B			B	T	T	T																									T	S			.	.	.	.	.	.							S	S	S	S		S	S		.	.	.	T	T	T		S				.
Template Predicted Secondary structure																																																		.	.	.	.	.	.															.	.	.									.
Template SS confidence
		673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720							.	.	.	.	.	.	.	.	.	730	.	.	.	.				.	.	.	.	.	740	.	.
		311	.	.	.	.	.	.								.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340
Predicted Secondary structure									.	.	.	.	.	.	.																.
Query SS confidence									.	.	.	.	.	.	.																.
Query Sequence		V	A	F	K	F	P	A	.	.	.	.	.	.	.	Q	E	Q	M	T	F	V	R	D	V	E	F	Q	V	G	.	R	T	G	A	I	T	P	V
Query Conservation									.	.	.	.	.	.	.																.
Alig confidence		.	.						.	.	.	.	.	.	.																.
Template Conservation		.	.
Template Sequence		.	.	L	K	L	K	K	D	Y	L	D	G	V	G	D	T	L	D	L	V	V	I	G	A	Y	L	G	R	G	K	R	A	G	R	Y	G	G	F
Template Known Secondary structure		.	.										S	S														B		T	T	S	B	T	S
Template Predicted Secondary structure		.	.
Template SS confidence
				743	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions