Job Description P15042 Confidence 97.95% Date Thu Jan 5 11:34:23 GMT 2012 Rank 52 Aligned Residues 148 % Identity 18% Template c1vs0A_ PDB info PDB header:ligase Chain: A: PDB Molecule:putative dna ligase-like protein rv0938/mt0965; PDBTitle: crystal structure of the ligase domain from m. tuberculosis ligd at2 2.4a Resolution 2.40 Å

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		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	I	T	S	N	V	R	T	I	R	A	I	P	L	K	L	H	G	E	N	I	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	F	E	K	I	N	E	D	A	R	R
Query Conservation
Alig confidence																					.							.	.	.	.																					.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.							.	.	.	.																					.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	A	F	E	G	W	D	G	Y	R	L	L	V	E	A	D	H	G	A	.	V	R	L	R	S	R	.	.	.	.	S	G	R	D	V	T	A	E	Y	P	Q	L	R	A	L	A	E	D	L	A	.	.	.	.	D	H	H	V	V	L	D	G	E	A	V	V	L	D	S	S	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S									T	T		.						T	.	.	.	.	T			B		G	G	G		G	G	G							T	T	.	.	.	.	T												B		T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.							.	.	.	.																					.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.		.	.	.	.	.	500					.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520					.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L	E	G	G	E	L	P	D	.	T	H	L	G	R	L	L	Q	F	K	K	W	G	L	P	V	S	D	R	V	T	L	C	E	S	A	E	E	V	L	A	F
Query Conservation																																																	.
Alig confidence		.														.	.	.	.	.	.	.	.	.	.	.	.																						.													.
Template Conservation		.														.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Sequence		.	G	V	P	S	F	S	Q	X	Q	N	R	G	R	.	.	.	.	.	.	.	.	.	.	.	.	D	T	R	V	E	F	W	A	F	D	L	L	Y	L	D	G	R	A	L	L	G	T	R	Y	Q	D	R	R	K	L	L	E	T	L	.	A	N	A	T	S	L	T	V	P	E	L	L	P	G	D	G	A	Q	A
Template Known Secondary structure		.	S		B							T			T	.	.	.	.	.	.	.	.	.	.	.	.	T	S													T	T				T	T	S													.				S										S	S
Template Predicted Secondary structure		.														.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template SS confidence
			538	.	540	.	.	.	.	.	.	.	.	.	550													.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.		.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K	V	N	S	L	A	Q	Q
Query Conservation
Alig confidence											.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.
Template Sequence		F	A	C	S	R	K	H	G	W	.	.	.	.	.	.	E	G	V	I	A	K	R	R	D	S	R	Y	Q
Template Known Secondary structure								T	T		.	.	.	.	.	.								T	T
Template Predicted Secondary structure											.	.	.	.	.	.
Template SS confidence
		604	.	.	.	.	.	610	.	.							.	.	.	.	.	.	.	620	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions