Job Description P15042 Confidence 100.00% Date Thu Jan 5 11:34:23 GMT 2012 Rank 2 Aligned Residues 580 % Identity 46% Template c1v9pB_ PDB info PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		E	S	I	E	Q	Q	L	T	E	L	R	T	T	L	R	H	H	E	Y	L	Y	H	V	M	D	A	P	E	I	P	D	A	E	Y	D	R	L	M	R	E	L	R	E	L	E	T	K	H	P	E	L	I	T	P	D	S	P	T	Q	R	V	G	A	A	P	.	L	A	A	F	S	Q	I	R	H	E	V	P	M	L
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		E	E	A	R	R	R	I	N	E	L	R	D	L	I	R	Y	H	N	Y	R	Y	Y	V	L	A	D	P	E	I	S	D	A	E	Y	D	R	L	L	R	E	L	K	E	L	E	E	R	F	P	E	F	K	S	P	D	S	P	T	E	Q	V	G	A	R	P	L	E	P	T	F	R	P	V	R	H	P	T	R	M	Y
Template Known Secondary structure																								T	T				S	S																			S	G	G	G			T	T	S	G	G	G	S		S	S	S												S	S
Template Predicted Secondary structure
Template SS confidence
		2004	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020	.	.	.	.	.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	D	N	V	F	D	E	E	S	F	L	A	F	N	K	R	V	Q	D	R	L	K	N	N	E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	I	T	S	N	V	R	T	I	R	A	I	P	L	K	L	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	D	N	A	F	T	Y	E	E	V	L	A	F	E	E	R	L	E	R	A	L	G	R	K	R	P	F	L	Y	T	V	E	H	K	V	D	G	L	S	V	N	L	Y	Y	E	E	G	V	L	V	F	G	A	T	R	G	D	G	E	V	G	E	E	V	T	Q	N	L	L	T	I	P	T	I	P	R	R	L	K
Template Known Secondary structure								S												T	T	T	T	S	S																B							T	T										S	S	S				B						T	T		T	T	S		S	B		S
Template Predicted Secondary structure
Template SS confidence
		2084	.	.	.	.	.	2090	.	.	.	.	.	.	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	N	I	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	F	E	K	I	N	E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L	E	G	G	E	L	P	D	T	H	L
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	G	V	P	D	R	L	E	V	R	G	E	V	Y	M	P	I	E	A	F	L	R	L	N	E	E	L	E	E	R	G	E	K	V	F	K	N	P	R	N	A	A	A	G	S	L	R	Q	K	D	P	R	V	T	A	K	R	G	L	R	A	T	F	Y	A	L	G	L	G	L	E	E	S	G	L	K	S	Q	Y
Template Known Secondary structure		.	.	S			S							B		B																S	S					S	S										S		S						T	T	S			B							S	T	T	T	T	T	T	T			B
Template Predicted Secondary structure		.	.
Template SS confidence
				2164	.	.	.	.	.	2170	.	.	.	.	.	.	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190	.	.	.	.	.	.	.	.	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.	.	.	.	2220	.	.	.	.	.	.	.	.	.	2230	.	.	.	.	.	.	.	.	.	2240	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	L	L	Q	F	K	K	W	G	L	P	V	S	D	R	V	T	L	C	E	S	A	E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K	V	N	S	L	A	Q	Q	E	Q	L	G	F	V	A	R	A	P	R	W	A	V	A	F	K	F	P	A	Q	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	L	L	W	L	K	E	K	G	F	P	V	E	H	G	Y	E	K	A	L	G	A	E	G	V	E	E	V	Y	R	R	F	L	A	Q	R	H	A	L	P	F	E	A	D	G	V	V	V	K	L	D	D	L	A	L	W	R	E	L	G	Y	T	A	R	A	P	R	F	A	L	A	Y	K	F	P	A	E	E	K
Template Known Secondary structure										T	T					S							S															G	G	G	S	S	S									B	S	B	T						S		B		S	S	S	B	T	T
Template Predicted Secondary structure
Template SS confidence
		2242	.	.	.	.	.	.	.	2250	.	.	.	.	.	.	.	.	.	2260	.	.	.	.	.	.	.	.	.	2270	.	.	.	.	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.	.	.	.	.	.	.	.	.	2300	.	.	.	.	.	.	.	.	.	2310	.	.	.	.	.	.	.	.	.	2320	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	F	V	R	D	V	E	F	Q	V	G	R	T	G	A	I	T	P	V	A	R	L	E	P	V	H	V	A	G	V	L	V	S	N	A	T	L	H	N	A	D	E	I	E	R	L	G	L	R	I	G	D	K	V	V	I	R	R	A	G	D	V	I	P	Q	V	V	N	V	V	L	S	E	R	P	E	D	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	R	L	L	D	V	V	F	Q	V	G	R	T	G	R	V	T	P	V	G	V	L	E	P	V	F	I	E	G	S	E	V	S	R	V	T	L	H	N	E	S	Y	I	E	E	L	D	I	R	I	G	D	W	V	L	V	H	K	A	G	G	V	I	P	E	V	L	R	V	L	K	E	R	R	T	G	E	E	R
Template Known Secondary structure														T	T		B												S	S	S	S									S							T	T			T	T								G	G	G	S	S								G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		2322	.	.	.	.	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.	.	.	.	.	.	.	2360	.	.	.	.	.	.	.	.	.	2370	.	.	.	.	.	.	.	.	.	2380	.	.	.	.	.	.	.	.	.	2390	.	.	.	.	.	.	.	.	.	2400	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	V	F	P	T	H	C	P	V	C	G	S	D	V	E	R	V	E	G	E	A	V	A	R	C	T	G	G	L	I	C	G	A	Q	R	K	E	S	L	K	H	F	V	S	R	R	A	M	D	V	D	G	M	G	D	K	I	I	D	Q	L	V	E	K	E	Y	V	H	T	P	A	D	L	F	K	L	T	A	G
Query Conservation
Alig confidence																							.	.							.
Template Conservation																							.	.							.
Template Sequence		P	I	R	W	P	E	T	C	P	E	C	G	H	R	L	V	K	E	G	K	V	.	.	H	R	C	P	N	P	.	L	C	P	A	K	R	F	E	A	I	R	H	Y	A	S	R	K	A	M	D	I	E	G	L	G	E	K	L	I	E	R	L	L	E	K	G	L	V	R	D	V	A	D	L	Y	H	L	R	K	E
Template Known Secondary structure							S	B		T	T	T			B		B			T	T	S	.	.		B				T	.	T		G	G	G										S	T	T	T	T			T	T													T	S		S	S	G	G	G	G	T	G	G	G
Template Predicted Secondary structure																							.	.							.
Template SS confidence
		2402	.	.	.	.	.	.	.	2410	.	.	.	.	.	.	.	.	.	2420	.	.			.	.	.	.	.	.		.	2430	.	.	.	.	.	.	.	.	.	2440	.	.	.	.	.	.	.	.	.	2450	.	.	.	.	.	.	.	.	.	2460	.	.	.	.	.	.	.	.	.	2470	.	.	.	.	.	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	T	G	L	E	R	M	G	P	K	S	A	Q	N	V	V	N	A	L	E	K	A	K	E	T	T	F	A	R	F	L	Y	A	L	G	I	R	E	V	G	E	A	T	A	A	G	L	A	A	Y	F	G	T	L	E	A	L	E	A	A	S	I	E	E	L	Q	K	V	P	D	V	G	I	V	V	A	S	H	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	L	G	L	E	R	M	G	E	K	S	A	Q	N	L	L	R	Q	I	E	E	S	K	H	R	G	L	E	R	L	L	Y	A	L	G	L	P	G	V	G	E	V	L	A	R	N	L	A	R	R	F	G	T	M	D	R	L	L	E	A	S	L	E	E	L	L	E	V	E	E	V	G	E	L	T	A	R	A	I
Template Known Secondary structure					T	T	S	S			S	S	S								T	T	T	G	G	G	S										T		T	T															B					T	T								T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		2479	2480	.	.	.	.	.	.	.	.	.	2490	.	.	.	.	.	.	.	.	.	2500	.	.	.	.	.	.	.	.	.	2510	.	.	.	.	.	.	.	.	.	2520	.	.	.	.	.	.	.	.	.	2530	.	.	.	.	.	.	.	.	.	2540	.	.	.	.	.	.	.	.	.	2550	.	.	.	.	.	.	.	.
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	F	F	A	E	E	S	N	R	N	V	I	S	E	L	L	A	E	G	V	H	W	P	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	T	L	K	D	P	A	F	R	D	L	V	R	R	L	K	E	A	G	V	S	M	E	S	K
Template Known Secondary structure						T														T	T				B
Template Predicted Secondary structure
Template SS confidence
		2559	2560	.	.	.	.	.	.	.	.	.	2570	.	.	.	.	.	.	.	.	.	2580	.	.	.	.