Job Description P15042 Confidence 96.41% Date Thu Jan 5 11:34:23 GMT 2012 Rank 86 Aligned Residues 176 % Identity 19% Template c1p16A_ PDB info PDB header:transferase Chain: A: PDB Molecule:mrna capping enzyme alpha subunit; PDBTitle: structure of an mrna capping enzyme bound to the2 phosphorylated carboxyl-terminal domain of rna polymerase3 ii Resolution 2.70 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																			.	.	.	.																	.	.	.
Query SS confidence																			.	.	.	.																	.	.	.
Query Sequence		T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	.	.	.	.	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	.	.	.	G	E	D	I	T	S	N	V	R	T	I	R	A	I	P	L	K	L	H	G	E	N	I	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	F
Query Conservation																			.	.	.	.																	.	.	.
Alig confidence																			.	.	.	.																	.	.	.																			.	.	.	.	.	.																.
Template Conservation																																																												.	.	.	.	.	.																.
Template Sequence		D	Y	F	V	C	E	K	T	D	G	L	R	C	L	L	F	L	I	N	D	P	D	K	G	E	G	V	F	L	V	T	R	E	N	D	Y	Y	F	I	P	N	I	H	F	P	L	S	V	N	E	T	R	E	K	P	T	Y	H	.	.	.	.	.	.	H	G	T	L	L	D	G	E	L	V	L	E	N	R	N	.
Template Known Secondary structure											S											T	T	T									T	T								S					S		T	T			S	S	S					.	.	.	.	.	.	S	S													S	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.																.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.							.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	I	N	E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L	E	G	.	G	E	L	P	D	T	H	L	G	R	L	L	Q	F	K	K	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	E	P	V	L	R	Y	V	I	F	D	A	L	A	I	H	G	K	C	I	I	D	R	P	L	P	K	R	L	G	Y	I	T	E	N	V	X	K	P	F	D	N	F	K	K	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S															T	T				T	T	S													T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																			134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
									249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	W	G	L	P	V	S	D	R	V	T	L	C	E	S	A	E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K	V	N	S	L	A	Q	Q	E	Q	L	G	F	V	A	R	A	P	R	W	A	V	A	F	K	F	P	A	Q	E	Q	M
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																							.	.	.	.																							.	.	.	.	.										.	.	.
Template Conservation																															.	.	.	.																							.	.	.	.	.										.	.	.
Template Sequence		N	P	D	I	V	N	S	P	E	F	P	F	K	V	G	F	K	T	X	L	T	S	Y	H	A	D	D	V	L	.	.	.	.	S	K	X	D	K	L	F	H	A	S	D	G	L	I	Y	T	C	A	E	T	P	Y	.	.	.	.	.	V	F	G	T	D	Q	T	L	L	.	.	.	K	W	K	P	A	E	E	N
Template Known Secondary structure							S		T	T	S												G	G	G	T					.	.	.	.	T	T	G	G	G		S	S										S	S	S			.	.	.	.	.		S								.	.	.					G	G	G
Template Predicted Secondary structure																															.	.	.	.																							.	.	.	.	.										.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	V	R	D	V	E	F	Q	V	G	R	T	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	D	F	Q	L	E	F	V	F	N	E	V	Q	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions