Job Description P15042 Confidence 97.99% Date Thu Jan 5 11:34:23 GMT 2012 Rank 50 Aligned Residues 227 % Identity 16% Template c1a0iA_ PDB info PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: atp-dependent dna ligase from bacteriophage t7 complex with2 atp Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		E	V	P	M	L	S	L	D	N	V	F	D	E	E	S	F	L	A	F	N	K	R	V	Q	D	R	L	K	N	N	E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	I	T	.	.	.	S	N	V	R	T	I
Query Conservation																																																																									.	.	.
Alig confidence									.	.														.	.	.	.	.	.	.	.	.																																.	.	.	.						.	.	.
Template Conservation									.	.														.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Sequence		T	N	P	F	K	A	V	.	.	S	F	V	E	S	A	I	K	K	A	L	D	N	.	.	.	.	.	.	.	.	.	A	G	Y	L	I	A	E	I	K	Y	D	G	V	R	G	N	I	C	V	D	N	T	A	N	S	Y	W	L	S	R	V	.	.	.	.	S	K	T	I	P	A	L	E	H	L	N	G	F	D
Template Known Secondary structure									.	.														.	.	.	.	.	.	.	.	.		S	S									S									T	T	S							T	T	.	.	.	.	S		B		G	G	G	G	G	G
Template Predicted Secondary structure									.	.														.	.	.	.	.	.	.	.	.																																.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.										.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70
		153	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		R	A	I	P	L	K	L	H	G	E	N	I	.	.	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	F	E	K	I	N	E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L
Query Conservation														.	.
Alig confidence														.	.																																.	.	.	.
Template Conservation																																															.	.	.	.
Template Sequence		V	R	W	K	R	L	L	N	D	D	R	C	F	Y	K	D	G	F	M	L	D	G	E	L	M	V	K	G	V	D	F	N	T	G	S	G	L	L	R	T	K	W	T	D	T	.	.	.	.	K	N	Q	E	F	H	R	K	K	D	K	V	P	F	K	L	H	T	G	H	L	H	I	K	L	Y	A	I	L	P	L
Template Known Secondary structure										S	T	T				T	T											S	S	S		T	T	T									S			S	.	.	.	.	S	B	S	S						S						B		T	T	T
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		231															.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	E	L	P	D	T	H	L	G	R	L	L	Q	F	K	K	W	G	L	P	V	S	D	R	V	T	L	C	E	S	A	E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K	V	N	S	L	A	Q
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.
Template Sequence		H	I	V	E	S	G	E	D	C	D	V	M	T	L	L	M	Q	E	H	V	K	N	M	L	P	L	L	Q	E	Y	F	P	E	I	E	W	Q	A	A	E	S	Y	E	V	Y	D	M	V	E	L	Q	Q	L	Y	E	Q	K	R	A	E	.	.	.	.	.	.	G	H	E	G	L	I	V	K	D	P	M	C	I	Y
Template Known Secondary structure																																	T	T	S											S	S													T	T	.	.	.	.	.	.	T									T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		Q	E	Q	L	G	F	V	A	R	A	P	R	W	A	V	A	F	K	F	P	.	A	Q	E	Q	M	T	F	V	R	D	V	E	F	Q	V	G	R	T	G
Query Conservation																						.
Alig confidence				.	.						.	.	.		.	.	.					.
Template Conservation				.	.						.	.	.		.	.	.
Template Sequence		K	R	.	.	G	K	K	S	G	.	.	.	W	.	.	.	W	K	M	K	P	E	N	E	A	D	G	I	I	Q	G	L	V	W	G	T	K	G	L	A
Template Known Secondary structure			S	.	.						.	.	.		.	.	.				S																	T	T	T	S
Template Predicted Secondary structure				.	.						.	.	.		.	.	.
Template SS confidence
		229	230			.	.	.	.	.				.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions