Phyre 2 alignment of P11454 with c3qovD

Job Description P11454
Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012

Rank 35 Aligned Residues 341

% Identity 16% Template c3qovD_

PDB info PDB header:ligase Chain: D: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of a hypothetical acyl-coa ligase (bt_0428) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.				.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence	P	L	Q	L	S	Q	P	H	H	T	A	Y	I	I	F	T	S	G	S	T	G	R	P	K	G	V	M	V	G	Q	T	A	I	V	N	R	L	L	W	M	Q	N	H	Y	.	.	.	P	L	T	G	E	D	V	V	A	Q	K	T	P	C	S	F	D	V	S	V	W	E	F	F	W	P	F	I	A	G	A	K	L
Query Conservation																																													.	.	.
Alig confidence																																													.	.	.
Template Conservation
Template Sequence	N	Y	P	F	G	L	V	A	G	D	X	K	R	D	G	V	R	I	H	S	S	N	P	T	V	I	V	H	S	Q	H	D	L	D	S	W	A	N	L	V	A	R	C	L	Y	X	V	G	I	R	K	T	D	V	F	Q	N	S	S	G	Y	G	X	F	T	G	G	L	G	F	Q	Y	G	A	E	R	L	G	C	L
Template Known Secondary structure	T	T	T	T	T	T			S																																						T	T			T	T	S						S			T	T															T
Template Predicted Secondary structure
Template SS confidence
	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.

	665	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	M	A	E	P	E	A	H	R	D	P	L	A	M	Q	Q	F	F	A	E	Y	G	V	T	T	T	H	F	V	P	S	M	L	A	A	F	V	A	S	L	T	P	Q	T	A	R	Q	S	C	A	T	L	K	Q	V	F	C	S	G	E	A	L	P	A	D	L	C	R	E	W	Q	Q	L	T	G	A	P	L	H	N
Query Conservation
Alig confidence								.	.
Template Conservation								.	.
Template Sequence	T	V	P	A	A	A	G	.	.	N	S	K	R	Q	I	K	F	I	S	D	F	K	T	T	A	L	H	A	I	P	S	Y	A	I	R	L	A	E	V	F	Q	E	E	G	I	D	P	R	E	T	T	L	K	T	L	V	I	G	A	E	P	H	T	D	E	Q	R	R	K	I	E	R	X	L	N	V	K	A	Y	N
Template Known Secondary structure						S		.	.													T																					T	T			T	T	S	S	S								S	S															T	S
Template Predicted Secondary structure								.	.
Template SS confidence
	158	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

	745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.		.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence	L	Y	G	P	T	E	A	A	V	D	V	S	W	Y	P	A	F	G	E	E	L	A	Q	V	R	G	S	S	V	P	I	G	Y	P	V	W	N	T	G	L	R	I	L	D	.	A	M	M	H	P	V	P	P	G	V	A	G	D	L	Y	L	T	G	I	Q	L	A	Q	G	Y	L	G	R	P	D	L	T	A	S	R
Query Conservation																																													.
Alig confidence																					.	.	.	.	.	.	.	.	.																.																																.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.																																																.	.	.	.
Template Sequence	S	F	G	X	T	E	X	N	G	P	G	V	A	F	E	C	Q	E	Q	N	.	.	.	.	.	.	.	.	.	G	X	H	F	W	E	D	C	Y	L	V	E	I	I	D	P	E	T	G	E	P	V	P	E	G	E	I	G	E	L	V	L	T	T	L	D	R	E	X	X	P	L	I	R	Y	R	T	.	.	.	.
Template Known Secondary structure					G	G	G	T									T	T		S	.	.	.	.	.	.	.	.	.	S					T	T	T								T	T	T		S	B		S	T	T										S	S			S	S				S				.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																																																.	.	.	.
Template SS confidence
	236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.										.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

	824	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	I	A	D	P	F	A	P	G	E	R	M	Y	R	T	G	D	V	A	R	W	L	D	N	G	A	V	E	Y	L	G	R	S	D	D	Q	L	K	I	R	G	Q	R	I	E	L	G	E	I	D	R	V	M	Q	A	L	P	D	V	E	Q	A	V	T	H	A	C	V	I	N	Q	A	A	A	T	G	G	D	A	R
Query Conservation
Alig confidence	.	.	.	.	.	.																																																																				.	.	.	.	.
Template Conservation	.	.	.	.	.	.																																																																				.	.	.	.	.
Template Sequence	.	.	.	.	.	.	R	D	L	T	R	I	L	P	G	K	C	P	C	G	R	T	H	L	R	I	D	R	I	K	G	R	S	D	D	X	F	I	I	K	G	V	N	I	F	P	X	Q	V	E	K	I	L	V	Q	F	P	E	L	G	S	N	Y	L	I	T	L	E	T	N	Q	D	E	.	.	.	.	.	X	I
Template Known Secondary structure	.	.	.	.	.	.									S			T	T				S										S	T	T					T	T													T	T		T	T																.	.	.	.	.
Template Predicted Secondary structure	.	.	.	.	.	.																																																																				.	.	.	.	.
Template SS confidence
							303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.						370	.

	904	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.				.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence	Q	L	V	G	Y	L	V	S	Q	S	G	L	P	L	D	T	S	A	L	Q	A	Q	L	R	E	T	L	P	P	H	M	V	P	V	V	.	.	.	L	L	Q	L	P	Q	L	P	L	S	A	N	G	K	L	D	R
Query Conservation																																				.	.	.
Alig confidence																																				.	.	.											.
Template Conservation																																																	.
Template Sequence	V	E	V	E	L	S	D	L	S	T	D	N	Y	I	E	L	E	K	I	R	R	D	I	I	R	Q	L	K	D	E	I	L	V	T	P	K	V	K	L	V	K	K	G	S	L	P	Q	S	.	E	G	K	A	V	R
Template Known Secondary structure							S	S																								S	S									T	T		S				.	S	S	S
Template Predicted Secondary structure																																																	.
Template SS confidence
	374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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