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Job DescriptionP11454
Confidence100.00%DateThu Jan 5 11:32:39 GMT 2012
Rank18Aligned Residues457
% Identity24%Templatec3nyrA_
PDB info PDB header:ligaseChain: A: PDB Molecule:malonyl-coa ligase; PDBTitle: malonyl-coa ligase ternary product complex with malonyl-coa and amp2 bound
Resolution1.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   457..460.........470.........480.........490.........500.........510.........520.........530......
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Query Sequence  LSALVAEQAAKTPDAPALADARYLFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLD
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Template Conservation 
  
    
   

  

       

 

      

  
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Template Sequence  FPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRI. . . . . . . . GRVAVWATPAMETGVAVVAALLAGVAAVPLN
Template Known Secondary structure 
TTTSS


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   5....10.........20.........30.........40..... ....50.........60.........70......
 
   537..540.........550.........560.........570.........580.........590.........600.........610......
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Query Sequence  TGYPDDRLKMMLEDARPSLLITTDDQLPRFSDVPNLTSLCYNAPLTPQGSAPLQLSQPHHTAYIIFTSGSTGRPKGVMVG
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Template Sequence  PKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDV. . . RARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIP
Template Known Secondary structure  TT



S
TT



GGGTTS

T...T










TTS

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   80.........90.........100.........110.........120. ........130.........140.........150......
 
   617..620.........630.........640.........650.........660.........670.........680.........690......
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Query Sequence  QTAIVNRLLWMQNHYPLTGEDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSM
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Template Sequence  RRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRF. . STEGAARELNDGATMLFGVPTMY
Template Known Secondary structure  T

TT



TTSTTTTT

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TTT


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   157..160.........170.........180.........190.........200.........210. ........220.........230....
 
   697..700.........710.........720.........730.........740.........750.........760.........770......
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Query Sequence  LAAFVASLTPQTARQSCATLKQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIG
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Template Sequence  HRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAG. . . . . . . TVG
Template Known Secondary structure  GGG

S
SS


S


GGG

TTS


TT.......


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   235....240.........250.........260.........270.........280.........290.........300.... ...
 
   777..780.........790.........800.........810.........820.........830.........840.........850......
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Query Sequence  YPVWNTGLRILDAMMHPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDNGAVEYLGRS
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Template Sequence  VPLPGVELRLVPI. . AALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTED. . . . . . GFFRTGDMAVRDPDGYVRIVGRK
Template Known Secondary structure 
TT



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S


STTS

TT
TB
TT......S

TTS
S
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   308.310.........320 .........330.........340.........350...... ...360.........370.........
 
   857..860.........870.........880.........890.........900.........910.. .......920.........930....
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Query Sequence  . DDQLKIRGQRIELGEIDRVMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQ. SGLPLDTSALQAQLRETLPPHM
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Template Sequence  ATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLG. . . . . . ERIVAWIVPADPAAPPALGTLADHVAARLAPHK
Template Known Secondary structure  S


TT
TTSTTTTT......SSTTS


T
GGG
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   385....390.........400.........410.........420..... ....430.........440.........450........
 
   935....940.......
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Query Sequence  VPVVLLQLPQLPL
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Template Sequence  RPRVVRYLDAVPR
Template Known Secondary structure  S
S
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   459460.........470.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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