Job Description P11454 Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012 Rank 14 Aligned Residues 516 % Identity 17% Template c3kxwA_ PDB info PDB header:ligase Chain: A: PDB Molecule:saframycin mx1 synthetase b; PDBTitle: the crystal structure of fatty acid amp ligase from legionella2 pneumophila Resolution 1.85 Å

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		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.					.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		T	Q	V	E	I	P	E	T	T	L	S	A	L	V	A	E	Q	A	A	K	T	P	D	A	P	A	L	A	D	A	R	.	.	.	.	Y	L	F	S	Y	R	E	M	R	E	Q	V	V	A	L	A	N	L	L	R	E	R	G	V	K	P	G	D	S	V	A	V	A	L	P	R	S	V	F	L	T	L	A	L	H
Query Conservation																																	.	.	.	.
Alig confidence																																	.	.	.	.
Template Conservation
Template Sequence		K	K	E	Y	L	Q	C	Q	S	L	V	D	V	V	R	L	R	A	L	H	S	P	N	K	K	S	C	T	F	L	N	K	E	L	E	E	T	X	T	Y	E	Q	L	D	Q	H	A	K	A	I	A	A	T	L	Q	A	E	G	A	K	P	G	D	R	V	L	L	L	F	A	P	G	L	P	L	I	Q	A	F	L
Template Known Secondary structure		S					T		S	S													T	T	S								T	T																								T	T			T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.				.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.					570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.																													.	.	.	.
Query SS confidence																				.	.	.																													.	.	.	.
Query Sequence		A	I	V	E	A	G	A	A	W	L	P	L	D	T	G	Y	P	D	.	.	.	D	R	L	K	M	M	L	E	D	A	R	P	S	L	L	I	T	T	D	D	Q	L	P	R	F	S	D	V	.	.	.	.	P	N	L	T	S	L	C	Y	N	A	P	L	T	P	Q	G	S	A	P	L	Q	L	S	Q	P	H	H
Query Conservation																				.	.	.																													.	.	.	.
Alig confidence																				.	.	.																													.	.	.	.
Template Conservation
Template Sequence		G	C	L	Y	A	G	C	I	A	V	P	I	Y	P	P	A	Q	E	K	L	L	D	K	A	Q	R	I	V	T	N	S	K	P	V	I	V	L	X	I	A	D	H	I	K	K	F	T	A	N	P	K	F	L	K	I	P	A	I	A	L	E	S	I	E	L	N	R	S	S	S	W	Q	P	T	S	I	K	S	N	D
Template Known Secondary structure						T	T											S																	S																			T	T						G	G	G			G	G	G	G	G	G								T	T	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		T	A	Y	I	I	F	T	S	G	S	T	G	R	P	K	G	V	M	V	G	Q	T	A	I	V	N	R	L	L	W	M	Q	N	H	Y	P	L	T	G	E	D	V	V	A	Q	K	T	P	C	S	F	D	V	S	V	W	E	F	F	W	P	F	I	A	G	A	K	L	V	M	A	E	P	E	A	H	R	.	.	D
Query Conservation																																																																															.	.
Alig confidence																																																																															.	.
Template Conservation
Template Sequence		I	A	F	L	Q	Y	T	S	G	S	T	X	H	P	K	G	V	X	V	S	H	H	N	L	L	D	N	L	N	K	I	F	T	S	F	H	X	N	D	E	T	I	I	F	S	W	L	P	P	H	H	D	X	G	L	I	G	C	I	L	T	P	I	Y	G	G	I	Q	A	I	X	X	S	P	F	S	F	L	Q	N
Template Known Secondary structure									S	S		S	S	S																						T	T			T	T							S		T	T	S						T	T	T							T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		675	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.		.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.							.	740	.	.	.	.	.	.	.
Predicted Secondary structure																																			.																																.	.	.	.	.	.
Query SS confidence																																			.																																.	.	.	.	.	.
Query Sequence		P	L	A	M	Q	Q	F	F	A	E	Y	G	V	T	T	T	H	F	V	P	S	M	L	A	A	F	V	A	S	L	T	P	Q	.	T	A	R	Q	S	C	A	T	L	K	Q	V	F	C	S	G	E	A	L	P	A	D	L	C	R	E	W	Q	Q	L	T	.	.	.	.	.	.	G	A	P	L	H	N	L	Y	G
Query Conservation																																			.																																.	.	.	.	.	.
Alig confidence																																			.																																.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	S	W	L	K	H	I	T	K	Y	K	A	T	I	S	G	S	P	N	F	A	Y	D	Y	C	V	K	R	I	R	E	E	K	K	E	G	L	D	L	S	S	W	V	T	A	F	N	G	A	E	P	V	R	E	E	T	X	E	H	F	Y	Q	A	F	K	E	F	G	F	R	K	E	A	F	Y	P	C	Y	G
Template Known Secondary structure		T											T		S						T												G	G	G	G	T	T				T	T								S	S															G	G	G	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		748	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.																			.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.		.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		P	T	E	A	A	V	D	V	S	W	Y	P	A	F	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	A	Q	V	R	G	S	S	V	P	I	G	Y	P	V	W	N	T	G	L	R	I	L	D	.	A	M	M	H	P	V	P	P	G	V	A	G	D	L	Y	L	T	G	I	Q
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		L	A	E	A	T	L	L	V	T	G	G	T	P	G	S	S	Y	K	T	L	T	L	A	K	E	Q	F	Q	D	H	R	V	H	F	A	D	D	N	S	P	G	S	Y	K	L	V	S	S	G	N	P	I	Q	E	V	K	I	I	D	P	D	T	L	I	P	C	D	F	D	Q	V	G	E	I	W	V	Q	S	N	S
Template Known Secondary structure			G	G	G	S	S							T	T	S									S				S	S	S	B			B			T	T		T	T											S	S							T	T	T			B			T	T	B								S	T	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		809	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.				.	.	.	.
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		L	A	Q	G	Y	L	G	R	P	D	L	T	A	S	R	F	I	A	D	P	F	A	P	G	E	R	M	Y	R	T	G	D	V	A	R	W	L	D	N	G	A	V	E	Y	L	G	R	S	D	D	Q	L	K	I	R	G	Q	R	I	E	L	G	E	I	D	R	V	M	Q	A	L	P	D	.	.	.	V	E	Q	A
Query Conservation																																																																											.	.	.
Alig confidence																						.	.																																																				.	.	.
Template Conservation																						.	.
Template Sequence		V	A	K	G	Y	W	N	Q	P	E	E	T	R	H	A	F	A	G	K	I	.	.	K	D	D	A	I	Y	L	R	T	G	D	L	G	F	L	H	E	N	E	L	Y	V	T	G	R	I	K	D	L	I	I	I	Y	G	K	N	H	Y	P	Q	D	I	E	F	S	L	X	H	S	P	L	H	H	V	L	G	K	C
Template Known Secondary structure		S				B	T	T											B			.	.	T	T				B											T	T								S	S									T	T												S	G	G	G	G	G
Template Predicted Secondary structure																						.	.
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.			.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		886	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.						920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		V	T	H	A	C	V	I	N	Q	A	A	A	T	G	G	D	A	R	Q	L	V	G	Y	L	V	S	Q	S	G	L	P	L	D	T	.	.	.	.	.	S	A	L	Q	A	Q	L	R	E	T	L	P	P	H	M	V	P	V	V	L	L	Q	L	P	Q	L	P	L	S	A	N	G	K	L	D	R	K	A	L	P	L
Query Conservation																																				.	.	.	.	.
Alig confidence													.	.	.	.	.	.																		.	.	.	.	.
Template Conservation													.	.	.	.	.	.
Template Sequence		A	A	F	V	I	Q	E	E	H	E	Y	.	.	.	.	.	.	K	L	T	V	X	C	E	V	K	N	R	F	X	D	D	V	A	Q	D	N	L	F	N	E	I	F	E	L	V	Y	E	N	H	Q	L	E	V	H	T	I	V	L	I	P	L	K	A	X	P	H	T	T	S	G	K	I	R	R	N	F	C	R	K
Template Known Secondary structure									T	T			.	.	.	.	.	.									S		T	T																						S											T	T		S				S
Template Predicted Secondary structure													.	.	.	.	.	.
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.							.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
		961	.	.	.	.	.	.	.	.	970	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	L	K	A	Q	A	P	G	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	L	L	D	K	T	L	P	I	V	A
Template Known Secondary structure						T		S			S
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.