Job Description P11454 Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012 Rank 30 Aligned Residues 382 % Identity 21% Template c3ivrA_ PDB info PDB header:ligase Chain: A: PDB Molecule:putative long-chain-fatty-acid coa ligase; PDBTitle: crystal structure of putative long-chain-fatty-acid coa ligase from2 rhodopseudomonas palustris cga009 Resolution 2.00 Å

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		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	P	E	T	T	L	S	A	L	V	A	E	Q	A	A	K	T	P	D	A	P	A	L	A	D	A	R	Y	L	F	S	Y	R	E	M	R	E	Q	V	V	A	L	A	N	L	L	R	E	R	G	V	K	P	G	D	S	V	A	V	A	L	P	R	S	V	F	L	T	L	A	L	H	A	I	V	E	A	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	H	D	F	T	L	A	D	V	Y	R	R	N	A	A	L	F	P	D	R	T	A	F	M	V	D	G	V	R	L	T	H	R	D	Y	L	A	R	A	E	R	L	A	S	G	L	L	R	D	G	V	H	T	G	D	R	V	A	I	L	S	Q	N	C	S	E	M	I	E	L	I	G	A	V	A	L	I	G	A
Template Known Secondary structure			T	T															S	T	T	S						T	T																						T	T			T	T									S														T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.													.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	W	L	P	L	D	T	G	Y	P	D	D	R	L	K	M	M	L	E	D	A	R	P	S	L	L	I	T	T	D	D	Q	L	P	R	F	S	D	V	P	N	L	T	S	L	C	Y	.	.	.	.	.	.	.	.	.	.	.	.	N	A	P	L	T	P	Q	G	S	A	P	L	Q	L	S	Q	P	H	H	T	A
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	L	P	V	N	Y	R	L	N	A	D	E	I	A	F	V	L	G	D	G	A	P	S	V	V	V	A	G	T	D	Y	R	D	I	V	A	G	V	L	P	S	L	G	G	V	K	K	A	Y	A	I	G	D	G	S	G	P	F	A	P	F	K	D	L	A	S	D	T	P	F	S	A	P	E	F	G	A	A	D
Template Known Secondary structure								T	T	S																					S	T	T								G	G	G		S	S							S	S				S	S				G	G	G	T				S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		599	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	I	F	T	S	G	S	T	G	R	P	K	G	V	M	V	G	Q	T	A	I	V	N	R	L	L	W	M	Q	N	H	Y	P	L	T	G	E	D	V	V	A	Q	K	T	P	C	S	F	D	V	S	V	W	E	F	F	W	P	F	I	A	G	A	K	L	V	M	A	E	P	E	A	H	R	D	P	L	A	M
Query Conservation
Alig confidence																																																																											.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		G	F	V	I	I	H	T	A	A	G	R	P	R	G	A	L	I	S	Q	G	N	L	L	I	A	Q	S	S	L	V	D	A	W	R	L	T	E	A	D	V	N	L	G	M	L	P	L	F	H	V	T	G	L	G	L	M	L	T	L	Q	Q	A	G	G	A	S	V	I	A	A	K	F	D	.	.	.	P	A	Q	A
Template Known Secondary structure																																		T	T			T	T							S		T	T	S														T							S	S			.	.	.
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.
		679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	F	F	A	E	Y	G	V	T	T	T	H	F	V	P	S	M	L	A	A	F	V	A	S	L	T	P	Q	T	A	R	Q	S	C	A	T	L	K	Q	V	F	C	S	G	E	A	L	P	A	D	L	C	R	E	W	Q	Q	L	T	G	A	P	L	H	N	L	Y	G	P	T	E	A	A	V	D	V	S	W	Y
Query Conservation
Alig confidence																										.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.
Template Sequence		A	R	D	I	E	A	H	K	V	T	V	M	A	E	F	A	P	M	L	G	N	I	L	D	.	.	.	.	.	.	Q	A	A	P	A	Q	L	A	S	L	R	A	V	T	G	L	D	T	P	E	T	I	E	R	F	E	A	T	C	P	N	A	T	F	W	A	T	F	G	Q	S	E	T	S	G	L	S	T	F	A
Template Known Secondary structure									T								T	T								.	.	.	.	.	.				G	G	G	G	T	T																					T	T										G	G	G	T
Template Predicted Secondary structure																										.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.							.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		759	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	F	G	E	E	L	A	Q	V	R	G	S	S	V	P	I	G	Y	P	V	W	N	T	G	L	R	I	L	D	A	M	M	H	P	V	P	P	G	V	A	G	D	L	Y	L	T	G	I	Q	L	A	Q	G	Y	L	G	R	P	D	L	T	A	S	R	F	I	A	D	P	F	A	P	G	E	R	M	Y	R	T
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.
Template Sequence		P	Y	R	D	R	P	K	.	.	.	.	.	.	.	.	S	A	G	R	P	L	F	W	R	T	V	A	V	V	D	A	E	D	R	P	L	P	P	G	E	V	G	E	I	V	L	R	G	P	T	V	F	K	G	Y	W	N	N	A	A	A	T	Q	H	A	F	R	N	.	.	.	.	.	.	.	G	W	H	H	T
Template Known Secondary structure			G	G	G	S	T	T	.	.	.	.	.	.	.	.	S						T	T								T	T	S		B			T	T									S	T	T	S					T	T									T	G	G	.	.	.	.	.	.	.	G	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.									.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.								.	.	.	.	380
		839	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	V	A	R	W	L	D	N	G	A	V	E	Y	L	G	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	M	G	R	F	D	A	D	G	Y	L	F	Y	A	G	R	A
Template Known Secondary structure									T	T	S
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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