Job Description P11454 Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012 Rank 13 Aligned Residues 502 % Identity 20% Template c3gqwB_ PDB info PDB header:ligase Chain: B: PDB Molecule:fatty acid amp ligase; PDBTitle: crystal structure of a fatty acid amp ligase from e. coli with an acyl2 adenylate product bound Resolution 3.00 Å

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		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.				.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		T	Q	V	E	I	P	E	T	T	L	S	A	L	V	A	E	Q	A	A	K	T	P	D	A	P	A	L	A	D	A	R	.	.	.	Y	L	F	S	Y	R	E	M	R	E	Q	V	V	A	L	A	N	L	L	R	E	R	G	V	K	P	G	D	S	V	A	V	A	L	P	R	S	V	F	L	T	L	A	L	H	A
Query Conservation																																	.	.	.
Alig confidence																																	.	.	.
Template Conservation
Template Sequence		P	X	R	Y	A	D	F	P	T	L	V	D	A	L	D	Y	A	A	L	S	S	A	G	X	N	F	Y	D	R	R	C	Q	L	E	D	Q	L	E	Y	Q	T	L	K	A	R	A	E	A	G	A	K	R	L	L	S	L	N	L	K	K	G	D	R	V	A	L	I	A	E	T	S	S	E	F	V	E	A	F	F	A
Template Known Secondary structure						S			S	S									T	T	S	S								T	T																									T	T	T			T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.						.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.
Query Sequence		I	V	E	A	G	A	A	W	L	P	L	D	T	G	Y	P	D	D	R	L	K	M	M	L	E	D	A	R	P	S	L	L	I	T	T	D	D	Q	L	P	R	F	S	D	V	P	N	.	.	.	.	.	L	T	S	L	C	Y	N	A	P	L	T	P	Q	G	S	A	P	L	Q	L	S	Q	P	H	H	T	A	Y
Query Conservation																																																	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.
Template Conservation
Template Sequence		C	Q	Y	A	G	L	V	A	V	P	L	A	I	P	S	W	S	A	K	L	Q	G	L	L	A	S	C	Q	P	A	A	I	I	T	G	D	E	W	L	P	L	V	N	A	A	T	H	D	N	P	E	L	H	V	L	S	H	A	W	F	K	A	L	P	E	A	D	V	A	L	Q	R	P	V	P	N	D	I	A	Y
Template Known Secondary structure					T	T																									S						S	T	T									T	T		S	S	S											S				S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.		.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.		.	.	.
Predicted Secondary structure																																.																									.																					.
Query SS confidence																																.																									.																					.
Query Sequence		I	I	F	T	S	G	S	T	G	R	P	K	G	V	M	V	G	Q	T	A	I	V	N	R	L	L	W	M	Q	N	.	H	Y	P	L	T	G	E	D	V	V	A	Q	K	T	P	C	S	F	D	V	S	V	W	E	.	F	F	W	P	F	I	A	G	A	K	L	V	M	A	E	P	E	A	H	R	.	D	P	L
Query Conservation																																.																									.																					.
Alig confidence																																.																									.																					.
Template Conservation
Template Sequence		L	Q	Y	T	S	G	S	T	R	F	P	R	G	V	I	I	T	H	R	E	V	X	A	N	L	R	A	I	S	H	D	G	I	K	L	R	P	G	D	R	C	V	S	W	L	P	F	Y	H	D	X	G	L	V	G	F	L	L	T	P	V	A	T	Q	L	S	V	D	Y	L	R	T	Q	D	F	A	X	R	P	L
Template Known Secondary structure				G	G	G			S	S	S																					T	T	S				T	T									T	T	S								T					T	T	T														S	T
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.		.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.							.	740	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.																															.	.	.	.	.	.
Query SS confidence																																		.																															.	.	.	.	.	.
Query Sequence		A	M	Q	Q	F	F	A	E	Y	G	V	T	T	T	H	F	V	P	S	M	L	A	A	F	V	A	S	L	T	P	Q	T	.	A	R	Q	S	C	A	T	L	K	Q	V	F	C	S	G	E	A	L	P	A	D	L	C	R	E	W	Q	Q	L	T	.	.	.	.	.	.	G	A	P	L	H	N	L	Y	G	P	T
Query Conservation																																		.																															.	.	.	.	.	.
Alig confidence																																		.																															.	.	.	.	.	.
Template Conservation
Template Sequence		Q	W	L	K	L	I	S	K	N	R	G	T	V	S	V	A	P	P	F	G	Y	E	L	C	Q	R	R	V	N	E	K	D	L	A	E	L	D	L	S	C	W	R	V	A	G	I	G	A	E	P	I	S	A	E	Q	L	H	Q	F	A	E	C	F	R	Q	V	N	F	D	N	K	T	F	X	P	C	Y	G	L	A
Template Known Secondary structure										T	T																	S							T	T				T	T								S	S																T	T	T			G	G	G								G
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		750	.	.	.	.	.	.	.	.	.	760	.	.																						.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	A	V	D	V	S	W	Y	P	A	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	L	A	Q	V	R	G	S	S	V	P	I	G	Y	P	V	W	N	T	G	L	R	I	L	D	A	M	M	H	P	V	P	P	G	V	A	G	D	L	Y	L	T	G	I	Q
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	A	L	A	V	S	F	S	D	E	A	S	G	V	V	V	N	E	V	D	R	D	I	L	E	Y	Q	G	K	A	V	A	P	G	A	E	T	R	A	V	S	T	F	V	N	C	G	K	A	L	P	E	H	G	I	E	I	R	N	E	A	G	X	P	V	A	E	R	V	V	G	H	I	C	I	S	G	P	S
Template Known Secondary structure		G	G	S	S		S					T	T																	S	B						S	S									B						T	T								T	T	S		B			T	T	B								S	T	T
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		809	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	Q	G	Y	L	G	R	P	D	L	T	A	S	R	F	I	A	D	P	F	A	P	G	E	R	M	Y	R	T	G	D	V	A	R	W	L	D	N	G	A	V	E	Y	L	G	R	S	D	D	Q	L	K	I	R	G	Q	R	I	E	L	G	E	I	D	R	V	M	Q	A	L	P	D	V	E	Q	A	V	T	H
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.
Template Sequence		L	X	S	G	Y	F	G	D	Q	V	S	Q	D	E	I	A	A	T	.	.	.	.	.	.	.	.	G	W	L	D	T	G	D	L	G	Y	L	L	D	G	Y	L	Y	V	T	G	R	I	K	D	L	I	I	I	R	G	R	N	I	W	P	Q	D	I	E	Y	I	A	E	Q	E	P	E	I	H	S	G	D	A	I
Template Known Secondary structure						B	T	T												.	.	.	.	.	.	.	.	S												T	T								G	G	G					S	S														T	S	S	S			T	T	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.									.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		889	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930		.	.	.	.	.	.	.	.	.	940	.	.			.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.
Predicted Secondary structure																																												.													.	.
Query SS confidence																																												.													.	.
Query Sequence		A	C	V	I	N	Q	A	A	A	T	G	G	D	A	R	Q	L	V	G	Y	L	V	S	Q	S	G	L	P	L	D	T	S	A	L	Q	A	Q	L	R	E	T	L	.	P	P	H	M	V	P	V	V	L	L	Q	L	.	.	P	Q	L	P	L	S	A	N	G	K	L	D	R	K	A	L	P	L	P	E	L	K	A
Query Conservation																																												.													.	.
Alig confidence										.	.	.	.	.	.	.	.																											.													.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		A	F	V	T	A	Q	E	K	.	.	.	.	.	.	.	.	I	I	L	Q	I	Q	C	R	I	S	D	E	E	R	R	G	Q	L	I	H	A	L	A	A	R	I	Q	S	E	F	G	V	T	A	A	I	D	L	L	P	P	H	S	I	P	R	T	S	S	G	K	P	A	R	A	E	A	K	K	R	Y	Q	K	A
Template Known Secondary structure						T	T	S		.	.	.	.	.	.	.	.																															S										T	T	S	S				T	T	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		493	.	.	.	.	.	.	500									.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.