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Job DescriptionP11454
Confidence98.48%DateThu Jan 5 11:32:39 GMT 2012
Rank205Aligned Residues220
% Identity9%Templatec3fnbB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:acylaminoacyl peptidase smu_737; PDBTitle: crystal structure of acylaminoacyl peptidase smu_737 from2 streptococcus mutans ua159
Resolution2.12 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1057..1060.........1070........ .1080........ .1090.........1100.........1110.........1120......... 1130..
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Query Sequence  ILPLREGNGPTLFCFHPASGFA. WQFSVLSRYL. DPQWSIIGIQSPRPNGPMQTAANLDEVCEAHLATLLEQQPH. . GPY
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Template Sequence  AIISEDKAQDTLIVVGGGDTSREDLFYXLGYSGWEHDYNVLXVDLPGQGKNPNQGLHFEVDARAAISAILDWYQAPTEKI
Template Known Secondary structure 

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SS

TTT


TTSTTGGGGT



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   148.150.........160.........170.........180.........190.........200.........210.........220.......
 
   1133......1140.........1150.........1160.........1170.........1180.........1190.........1200.........1210..
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Query Sequence  YLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGSTSTELFTT
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Template Sequence  AIAGFSGGGYFTAQAVEK. . . . DKRIKAWIASTPIYDVAEVFRISFSVNKVAEVNLNKYAWQFGQ. . . . . . . . . . . . . VD
Template Known Secondary structure  TT....
TT

S

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T


TS.............S
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   228.230.........240..... ....250.........260.........270.........280........ .290
 
   1213......1220.........1230.........1240.........1250......... 1260........ .1270.........1280..
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Query Sequence  IEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWI. . . . AELDIYRQD. . . . . CAHVDIISPGTFEK.
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Template Sequence  FITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELXRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLXHYQ
Template Known Secondary structure 




GGG

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TT


TTTT

SGGGGGG
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   310.........320.........330.........340.........350.........360.........370.........380.........
 
   1283......1290...
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Query Sequence  IGPIIRATLNR
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Template Sequence  VFEWLNHIFKK
Template Known Secondary structure  T
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   390.........400
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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