Job Description P11454 Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012 Rank 9 Aligned Residues 470 % Identity 19% Template c3etcB_ PDB info PDB header:ligase Chain: B: PDB Molecule:amp-binding protein; PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298 Resolution 2.10 Å

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		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.						.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.
Query SS confidence																										.	.	.	.	.
Query Sequence		T	T	L	S	A	L	V	A	E	Q	A	A	K	T	P	D	A	P	A	L	A	D	A	R	.	.	.	.	.	Y	L	F	S	Y	R	E	M	R	E	Q	V	V	A	L	A	N	L	L	R	E	R	G	V	K	P	G	D	S	V	A	V	A	L	P	R	S	V	F	L	T	L	A	L	H	A	I	V	E	A	G
Query Conservation																										.	.	.	.	.
Alig confidence																										.	.	.	.	.
Template Conservation
Template Sequence		N	F	A	Y	D	V	V	D	V	Y	A	R	D	S	P	E	K	L	A	M	I	W	C	D	D	Y	G	N	E	K	I	F	T	F	K	D	L	K	Y	Y	S	D	K	A	A	N	F	F	V	K	H	G	I	G	K	G	D	Y	V	M	L	T	L	K	S	R	Y	D	F	W	Y	C	M	L	G	L	H	K	L	G
Template Known Secondary structure							T								S	T	T	S								S	S	S																								T	T			T	T								T	T		T													T
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.																									.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	W	L	P	L	D	T	G	Y	P	D	D	R	L	K	M	M	L	E	D	A	R	P	S	L	L	I	T	T	D	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	R	F	S	D	V	P	N	L	T	S	L	C	Y	N	A	P	L	T	P	Q	G
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	A	V	P	A	T	H	M	L	K	T	R	D	I	V	Y	R	I	E	K	A	G	L	K	M	I	V	C	I	A	E	D	D	V	P	E	Q	V	D	E	A	H	A	E	C	G	D	I	P	L	K	K	A	K	V	G	G	D	V	L	E	G	W	I	D	F	R	K	E	L	E	E	S	S	P	I	F	E	R
Template Known Secondary structure									T	T														T		S						S	S	T	T														S									S	S	S			T	T											S		S
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	P	L	Q	L	S	Q	P	H	H	T	A	Y	I	I	F	T	S	G	S	T	G	R	P	K	G	V	M	V	G	Q	T	A	I	V	N	R	L	L	W	M	Q	N	H	Y	P	L	T	G	E	D	V	V	A	Q	K	T	P	C	S	F	D	V	S	V	W	E	F	F	W	P	F	I	A	G	A	K	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	T	G	E	V	S	T	K	N	E	D	I	C	L	V	Y	F	S	S	G	T	A	G	F	P	K	M	V	E	H	D	N	T	Y	P	L	G	H	I	L	T	A	K	Y	W	Q	N	V	E	D	D	G	L	H	Y	T	V	A	D	S	G	W	G	K	C	V	W	G	K	L	Y	G	Q	W	I	A	G	C	A	V
Template Known Secondary structure				G	G	G	S			T	T	S										S	S	S	S								T	T											T	T	S				T	T									T	T	S	T						T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		666	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	E	P	E	A	H	R	D	P	L	A	M	Q	Q	F	F	A	E	Y	G	V	T	T	T	H	F	V	P	S	M	L	A	A	F	V	A	S	L	T	P	Q	T	A	R	Q	S	C	A	T	L	K	Q	V	F	C	S	G	E	A	L	P	A	D	L	C	R	E	W	Q	Q	L	T	G	A	P	L	H	N	L
Query Conservation
Alig confidence																																										.	.	.
Template Conservation																																										.	.	.
Template Sequence		F	V	Y	D	Y	D	R	F	E	A	K	N	M	L	E	K	A	S	K	Y	G	V	T	T	F	C	A	P	P	T	I	Y	R	F	L	I	K	E	D	L	.	.	.	S	H	Y	N	F	S	T	L	K	Y	A	V	V	A	G	E	P	L	N	P	E	V	F	N	R	F	L	E	F	T	G	I	K	L	M	E	G
Template Known Secondary structure							S	S														T																	S		T	.	.	.	T	T	T	T			S								S	S															S
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		746	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.						.	.	810	.	.	.	.	.	.	.	.	.	820
Predicted Secondary structure																																																																.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.
Query Sequence		Y	G	P	T	E	A	A	V	D	V	S	W	Y	P	A	F	G	E	E	L	A	Q	V	R	G	S	S	V	P	I	G	Y	P	V	W	N	T	G	L	R	I	L	D	A	M	M	H	P	V	P	P	G	V	A	G	D	L	Y	L	T	G	I	.	.	.	.	.	Q	L	A	Q	G	Y	L	G	R	P	D	L	T
Query Conservation																																																																.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.																																			.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence		F	G	Q	T	E	T	V	V	T	I	A	T	F	P	W	M	E	P	K	P	G	.	.	.	.	.	.	.	S	I	G	K	P	T	P	G	Y	K	I	E	L	M	D	R	D	G	R	L	C	E	V	G	E	E	G	E	I	V	I	N	T	M	E	G	K	P	V	G	L	F	V	H	Y	G	K	D	P	E	R	T
Template Known Secondary structure					T	T	S	S							T	T	S				T	T	.	.	.	.	.	.	.			B				T	T								T	T	S		B			T	T										T	T				T	T						T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370								.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		821	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	R	F	I	A	D	P	F	A	P	G	E	R	M	Y	R	T	G	D	V	A	R	W	L	D	N	G	A	V	E	Y	L	G	R	S	D	D	Q	L	K	I	R	G	Q	R	I	E	L	G	E	I	D	R	V	M	Q	A	L	P	D	V	E	Q	A	V	T	H	A	C	V	I	N	Q	A	A	A	T	G	G
Query Conservation
Alig confidence								.	.	.	.	.	.	.																																																																.	.	.	.
Template Conservation								.	.	.	.	.	.	.																																																																.	.	.	.
Template Sequence		E	E	T	W	H	D	.	.	.	.	.	.	.	G	Y	Y	H	T	G	D	M	A	W	M	D	E	D	G	Y	L	W	F	V	G	R	A	D	D	I	I	K	T	S	G	Y	K	V	G	P	F	E	V	E	S	A	L	I	Q	H	P	A	V	L	E	C	A	I	T	G	V	P	D	P	V	R	G	.	.	.	.
Template Known Secondary structure							T	.	.	.	.	.	.	.	T												T	T	S								S	S	S					T	T													T	T	S	T	T												T	T	T		.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.																																																																.	.	.	.
Template SS confidence
		423	.	.	.	.	.								.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		901	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.				920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		D	A	R	Q	L	V	G	Y	L	V	S	Q	S	G	L	P	L	D	T	.	.	.	S	A	L	Q	A	Q	L	R	E	T	L	P	P	H	M	V	P	V	V	L	L	Q	L	P	Q	L	P	L
Query Conservation																					.	.	.
Alig confidence		.	.																		.	.	.
Template Conservation		.	.
Template Sequence		.	.	Q	V	I	K	A	T	I	V	L	T	K	D	Y	T	P	S	D	S	L	K	N	E	L	Q	D	H	V	K	N	V	T	A	P	Y	K	Y	P	R	I	I	E	F	V	P	E	L	P	K
Template Known Secondary structure		.	.											T	T																			S		G	G	G			S						S
Template Predicted Secondary structure		.	.
Template SS confidence
				492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.