Job Description P11454 Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012 Rank 5 Aligned Residues 500 % Identity 24% Template c3e7wA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: crystal structure of dlta: implications for the reaction2 mechanism of non-ribosomal peptide synthetase (nrps)3 adenylation domains Resolution 2.28 Å

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		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		T	L	S	A	L	V	A	E	Q	A	A	K	T	P	D	A	P	A	L	A	D	A	R	Y	L	F	S	Y	R	E	M	R	E	Q	V	V	A	L	A	N	L	L	R	E	.	R	G	V	K	P	G	D	S	V	A	V	A	L	P	R	S	V	F	L	T	L	A	L	H	A	I	V	E	A	G	A	A	W	L	P
Query Conservation																																														.
Alig confidence																																														.
Template Conservation
Template Sequence		K	L	L	H	A	I	Q	T	H	A	E	T	Y	P	Q	T	D	A	F	R	S	Q	G	Q	S	L	T	Y	Q	E	L	W	E	Q	S	D	R	A	A	A	A	I	Q	K	R	I	S	G	E	K	K	S	P	I	L	V	Y	G	H	M	E	P	H	M	I	V	S	F	L	G	S	V	K	A	G	H	P	Y	I	P
Template Known Secondary structure														S	T	T	S						T	T																				T	T	T	S		S	S	S									S	S															T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		L	D	T	G	Y	P	D	D	R	L	K	M	M	L	E	D	A	R	P	S	L	L	I	T	T	D	D	Q	L	P	R	F	S	D	V	.	P	N	L	T	S	L	C	Y	N	A	P	L	T	P	Q	G	S	A	P	L	Q	L	S	Q	P	H	H	T	A	Y	I	I	F	T	S	G	S	T	G	R	P	K	G	V
Query Conservation																																					.
Alig confidence																																					.
Template Conservation
Template Sequence		V	D	L	S	I	P	S	E	R	I	A	K	I	I	E	S	S	G	A	E	L	L	I	H	A	A	G	L	S	I	D	A	V	G	Q	Q	I	Q	T	V	S	A	E	E	L	L	E	N	E	G	G	S	V	S	Q	D	Q	W	V	K	E	H	E	T	F	Y	I	I	Y	T	S	G	S	T	G	N	P	K	G	V
Template Known Secondary structure				T	T	S													T							S	S	S			T	T					S	S										T	S		S					G	G	G	S			T	T	S										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	G	Q	T	A	I	V	N	R	L	L	W	M	Q	N	H	Y	P	L	T	G	E	D	V	V	A	Q	K	T	P	C	S	F	D	V	S	V	W	E	F	F	W	P	F	I	A	G	A	K	L	V	M	A	E	P	E	A	H	R	D	P	L	A	M	Q	Q	F	F	A	E	Y	G	V	T	T	T	H	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	S	A	A	N	L	Q	S	F	T	D	W	I	C	A	D	F	P	V	S	G	G	K	I	F	L	N	Q	A	P	F	S	F	D	L	S	V	M	D	L	Y	P	C	L	Q	S	G	G	T	L	H	C	V	T	K	D	A	V	N	K	P	K	V	L	F	E	E	L	K	K	S	G	L	N	V	W	T	S	T
Template Known Secondary structure																			S	T	T	T	T	T							S		T	T	S	T												T	T													S														S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		694	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.		.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		P	S	M	L	A	A	F	V	A	S	L	T	P	Q	T	A	R	Q	S	C	A	T	L	K	Q	V	F	C	S	G	E	A	L	P	A	D	L	C	R	E	W	Q	Q	L	T	.	G	A	P	L	H	N	L	Y	G	P	T	E	A	A	V	D	V	S	W	Y	P	A	F	G	E	E	L	A	Q	V	R	G	S	S
Query Conservation																																															.
Alig confidence															.	.																															.																											.	.
Template Conservation															.	.																																																										.	.
Template Sequence		P	S	F	V	Q	M	C	L	M	D	P	G	F	.	.	S	Q	D	L	L	P	H	A	D	T	F	M	F	C	G	E	V	L	P	V	S	V	A	K	A	L	L	E	R	F	P	K	A	K	I	F	N	T	Y	G	P	T	E	A	T	V	A	V	T	S	V	E	I	T	N	D	V	.	.	I	S	R	S	E	S
Template Known Secondary structure										T	S	T	T		.	.	S	T	T	T		T	T								S	S															T	T										G	G	G	S	S		S										.	.		T	T		S	S
Template Predicted Secondary structure															.	.																																																										.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.
		773	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	I	G	Y	P	V	W	N	T	G	L	R	I	L	D	A	M	M	H	P	V	P	P	G	V	A	G	D	L	Y	L	T	G	I	Q	L	A	Q	G	Y	L	G	R	P	D	L	T	A	S	R	F	I	A	D	P	F	A	P	G	E	R	M	Y	R	T	G	D	V	A	R	W	L	D	N	G	A	V	E	Y
Query Conservation
Alig confidence																																																								.	.	.	.
Template Conservation																																																								.	.	.	.
Template Sequence		L	P	V	G	F	A	K	P	D	M	N	I	F	I	M	D	E	E	G	Q	P	L	P	E	G	E	K	G	E	I	V	I	A	G	P	S	V	S	R	G	Y	L	G	E	P	E	L	T	E	K	A	F	F	S	.	.	.	.	H	E	G	Q	W	A	Y	R	T	G	D	A	G	F	I	Q	D	G	Q	I	F	C
Template Known Secondary structure					B				T	T								T	T	S		B			T	T									S	T	T	S				B	T	T												.	.	.	.	S	S	S	S													T	T
Template Predicted Secondary structure																																																								.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.					.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		853	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.					.	920	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.
Query SS confidence																																																																				.	.	.	.
Query Sequence		L	G	R	S	D	D	Q	L	K	I	R	G	Q	R	I	E	L	G	E	I	D	R	V	M	Q	A	L	P	D	V	E	Q	A	V	T	H	A	C	V	I	N	Q	A	A	A	T	G	G	D	A	R	Q	L	V	G	Y	L	V	S	Q	S	G	L	P	L	D	.	.	.	.	T	S	A	L	Q	A	Q	L	R	E
Query Conservation																																																																				.	.	.	.
Alig confidence																																														.	.	.	.	.	.																	.	.	.	.
Template Conservation																																														.	.	.	.	.	.
Template Sequence		Q	G	R	L	D	F	Q	I	K	L	H	G	Y	R	M	E	L	E	E	I	E	F	H	V	R	Q	S	Q	Y	V	R	S	A	V	V	I	P	Y	Q	P	N	G	T	V	.	.	.	.	.	.	E	Y	L	I	A	A	I	V	P	E	E	H	E	F	E	K	E	F	Q	L	T	S	A	I	K	K	E	L	A	A
Template Known Secondary structure					S	S	S					T	T															S	T	T											S	S	S	S		.	.	.	.	.	.															S	S
Template Predicted Secondary structure																																														.	.	.	.	.	.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.							.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		929	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	P	P	H	M	V	P	V	V	L	L	Q	L	P	Q	L	P	L	S	A	N	G	K	L	D	R	K	A	L	P	L	P	E	L	K	A	Q	A	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	P	A	Y	M	I	P	R	K	F	I	Y	Q	D	H	I	Q	M	T	A	N	G	K	I	D	R	K	R	I	G	E	E	V	L	V	R	S	H	H	H
Template Known Secondary structure			S		G	G	G	S		S						S				B		T	T	S		B														T
Template Predicted Secondary structure
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.