Job Description P11454 Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012 Rank 19 Aligned Residues 489 % Identity 26% Template c3dhvA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-poly(phosphoribitol) ligase; PDBTitle: crystal structure of dlta protein in complex with d-alanine2 adenylate Resolution 2.00 Å

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		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	A	L	V	A	E	Q	A	A	K	T	P	D	A	P	A	L	A	D	A	R	Y	L	F	S	Y	R	E	M	R	E	Q	V	V	A	L	A	N	L	L	R	E	R	G	V	K	P	G	D	S	V	A	V	A	L	P	R	S	V	F	L	T	L	A	L	H	A	I	V	E	A	G	A	A	W	L	P	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	E	Q	I	E	K	W	A	A	E	T	P	D	Q	T	A	F	V	W	R	D	A	K	I	T	Y	K	Q	L	K	E	D	S	D	A	L	A	H	W	I	S	S	E	Y	P	D	D	R	S	P	I	M	V	Y	G	H	M	Q	P	E	M	I	I	N	F	L	G	C	V	K	A	G	H	A	Y	I	P	V	D
Template Known Secondary structure													S	T	T	S						T	T																							S	T	T										S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.				580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		T	G	Y	P	D	D	R	L	K	M	M	L	E	D	A	R	P	S	L	L	I	T	T	D	D	Q	L	P	R	F	S	D	V	P	N	L	T	S	L	C	Y	N	A	.	.	.	P	L	T	P	Q	G	S	A	P	L	Q	L	S	Q	P	H	H	T	A	Y	I	I	F	T	S	G	S	T	G	R	P	K	G	V
Query Conservation																																													.	.	.
Alig confidence																																													.	.	.																										.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.
Template Sequence		L	S	I	P	A	D	R	V	Q	R	I	A	E	N	S	G	A	K	L	L	L	S	A	T	A	V	T	V	T	D	L	P	V	R	I	V	S	E	D	N	L	K	D	I	F	F	T	H	K	G	N	T	P	N	P	E	H	A	V	K	G	D	E	N	F	Y	I	I	Y	T	S	.	.	.	.	.	P	K	G	V
Template Known Secondary structure		T	T	S													T							S	S				S	S			S	S					T										T	T	T					G	G	G	S			T	T	S									.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.
		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	G	Q	T	A	I	V	N	R	L	L	W	M	Q	N	H	Y	P	L	T	G	E	D	V	V	A	Q	K	T	P	C	S	F	D	V	S	V	W	E	F	F	W	P	F	I	A	G	A	K	L	V	M	A	E	P	E	A	H	R	D	P	L	A	M	Q	Q	F	F	A	E	Y	G	V	T	T	T	H	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	T	Y	N	C	L	V	S	F	T	K	W	A	V	E	D	F	N	L	Q	T	G	Q	V	F	L	N	Q	A	P	F	S	F	D	L	S	V	M	D	I	Y	P	S	L	V	T	G	G	T	L	W	A	I	D	K	D	M	I	A	R	P	K	D	L	F	A	S	L	E	Q	S	D	I	Q	V	W	T	S	T
Template Known Secondary structure																			T	T			S	S							S		T	T	S	G	G	G										T	T													S												T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		694	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.		.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		P	S	M	L	A	A	F	V	A	S	L	T	P	Q	T	A	R	Q	S	C	A	T	L	K	Q	V	F	C	S	G	E	A	L	P	A	D	L	C	R	E	W	Q	Q	L	.	T	G	A	P	L	H	N	L	Y	G	P	T	E	A	A	V	D	V	S	W	Y	P	A	F	G	E	E	L	A	Q	V	R	G	S	S
Query Conservation																																														.
Alig confidence															.	.																														.																										.	.
Template Conservation															.	.																																																								.	.
Template Sequence		P	S	F	A	E	M	C	L	M	E	A	S	F	.	.	S	E	S	M	L	P	N	M	K	T	F	L	F	C	G	E	V	L	P	N	E	V	A	R	K	L	I	E	R	F	P	K	A	T	I	M	N	T	Y	G	P	T	E	A	T	V	A	V	T	G	I	H	V	T	E	.	.	E	V	L	D	Q	Y	K	S
Template Known Secondary structure										T	S	T	T		.	.	S	T	T	T	S	T	T								S	S															T	T										G	G	G	S	S		S								.	.							S	S
Template Predicted Secondary structure															.	.																																																								.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.
		773	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	I	G	Y	P	V	W	N	T	G	L	R	I	L	D	A	M	M	H	P	V	P	P	G	V	A	G	D	L	Y	L	T	G	I	Q	L	A	Q	G	Y	L	G	R	P	D	L	T	A	S	R	F	I	A	D	P	F	A	P	G	E	R	M	Y	R	T	G	D	V	A	R	W	L	D	N	G	A	V	E	Y
Query Conservation
Alig confidence																																																								.	.	.	.
Template Conservation																																																								.	.	.	.
Template Sequence		L	P	V	G	Y	C	K	S	D	C	R	L	L	I	M	K	E	D	G	T	I	A	P	D	G	E	K	G	E	I	V	I	V	G	P	S	V	S	V	G	Y	L	G	S	P	E	L	T	E	K	A	F	T	M	.	.	.	.	I	D	G	E	R	A	Y	K	T	G	D	A	G	Y	V	E	N	G	L	L	F	Y
Template Known Secondary structure									T	T								S	S	S	S	B			T	T									S	T	T	S		S		B	T	T												.	.	.	.		T	T														T	T
Template Predicted Secondary structure																																																								.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.					.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		853	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.					920	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		L	G	R	S	D	D	Q	L	K	I	R	G	Q	R	I	E	L	G	E	I	D	R	V	M	Q	A	L	P	D	V	E	Q	A	V	T	H	A	C	V	I	N	Q	A	A	A	T	G	G	D	A	R	Q	L	V	G	Y	L	V	S	Q	S	G	L	P	L	D	T	.	.	.	.	S	A	L	Q	A	Q	L	R	E
Query Conservation																																																																					.	.	.	.
Alig confidence																																														.	.	.	.	.	.																		.	.	.	.
Template Conservation																																														.	.	.	.	.	.
Template Sequence		N	G	R	L	D	F	Q	I	K	L	H	G	Y	R	M	E	L	E	E	I	E	H	H	L	R	A	C	S	Y	V	E	G	A	V	I	V	P	I	K	K	G	E	K	Y	.	.	.	.	.	.	D	Y	L	L	A	V	V	V	P	G	E	H	S	F	E	K	E	F	K	L	T	S	A	I	K	K	E	L	N	E
Template Known Secondary structure					G	G	G					S	S															S	T	T											S	S	S	S		.	.	.	.	.	.											S				S	S														T
Template Predicted Secondary structure																																														.	.	.	.	.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.							.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		929	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	P	P	H	M	V	P	V	V	L	L	Q	L	P	Q	L	P	L	S	A	N	G	K	L	D	R	K	A	L	P	L	P	E	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	P	N	Y	M	I	P	R	K	F	M	Y	Q	S	S	I	P	M	T	P	N	G	K	V	D	R	K	K	L	L	S	E	V	T	A
Template Known Secondary structure		T	S		G	G	G	S		S						S				B		T	T	S	S	B
Template Predicted Secondary structure
Template SS confidence
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.