Return to main results Retrieve Phyre Job Id

Job DescriptionP11454
Confidence97.11%DateThu Jan 5 11:32:39 GMT 2012
Rank255Aligned Residues87
% Identity14%Templatec3d0kA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative poly(3-hydroxybutyrate) depolymerase lpqc; PDBTitle: crystal structure of the lpqc, poly(3-hydroxybutyrate) depolymerase2 from bordetella parapertussis
Resolution1.83 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1062.......1070.........1080........ .1090.........1100 .........1110.........1120.
Predicted Secondary structure 












..





..................










Query SS confidence 


























. .











. . . . . . . . . . . . . . . . . .




















Query Sequence  EGNGPTLFCFHPASGFAWQFSVLSRYL. . DPQWSIIGIQSP. . . . . . . . . . . . . . . . . . RPNGPMQTAANLDEVCEAHLA
Query Conservation   
    

  
   
    
  
   
..     



  
..................           
   
  
  
Alig confidence 


























..











..................




















Template Conservation      



 




             
   
 

  
                                   
      
Template Sequence  TPDRPVVVVQHGVLRNGADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLAN
Template Known Secondary structure 
TTS


TT

TT


TTTS
TTTTT
B
TTS
B

GGGSTT
Template Predicted Secondary structure 











































Template SS confidence 















































































   48.50.........60.........70.........80.........90.........100.........110.........120.......
 
   1122..... ..1130.........1140........
Predicted Secondary structure 
.




Query SS confidence 





.




















Query Sequence  TLLEQQ. PHGPYYLLGYSLGGTLAQGIA
Query Conservation   
    .
 


 
 
 
 

 

 
 
Alig confidence 





.




















Template Conservation 
      
  

 
 
 
 

      
Template Sequence  IRAAEIADCEQVYLFGHSAGGQFVHRLX
Template Known Secondary structure  TTS


SST
Template Predicted Secondary structure 





Template SS confidence 



























   128.130.........140.........150.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions