Job Description P11454 Confidence 99.51% Date Thu Jan 5 11:32:39 GMT 2012 Rank 68 Aligned Residues 227 % Identity 10% Template c2y6vB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:peroxisomal membrane protein lpx1; PDBTitle: peroxisomal alpha-beta-hydrolase lpx1 (yor084w) from2 saccharomyces cerevisiae (crystal form i) Resolution 2.83 Å

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		1061	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.									.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110								.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query Sequence		R	E	G	N	G	P	T	L	F	C	F	H	P	A	S	G	F	A	W	Q	F	S	V	L	S	R	Y	L	D	P	Q	W	.	.	.	.	.	.	.	.	S	I	I	G	I	Q	S	P	R	P	N	G	P	M	Q	T	A	A	.	.	.	.	.	.	.	N	L	D	E	V	C	E	A	H	L	A	T	L	L	E
Query Conservation																																		.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	T	A	T	R	L	N	L	V	F	L	H	G	S	G	M	S	K	V	V	W	E	Y	Y	L	P	R	L	V	A	A	D	A	E	G	N	Y	A	I	D	K	V	L	L	I	D	Q	V	N	H	G	D	S	A	V	R	N	R	G	R	L	G	T	N	F	N	W	I	D	G	A	R	D	V	L	K	I	A	T	E
Template Known Secondary structure		T	T												T	T			G	G	G	G	G	G	G	G	G	G	S					T	T	T													T	T	S							T	T	T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		1126	.					.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.
Predicted Secondary structure				.	.	.	.																																																																		.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.																																																																		.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	.	.	.	.	P	H	G	P	Y	Y	L	L	G	Y	S	L	G	G	T	L	A	Q	G	I	A	A	R	L	R	A	R	G	E	Q	V	A	F	L	G	L	L	D	T	W	P	P	E	T	Q	N	W	Q	E	K	E	A	N	G	L	D	P	E	V	L	A	E	I	N	R	.	.	.	.	.	.	.	.	.
Query Conservation				.	.	.	.																																																																		.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.																								.	.	.																																								.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.
Template Sequence		L	G	S	I	D	S	H	P	A	L	N	V	V	I	G	H	S	M	G	G	F	Q	A	L	A	C	D	V	L	.	.	.	Q	P	N	L	F	H	L	L	I	L	I	E	P	V	V	I	T	R	K	A	I	P	P	D	S	P	Q	I	P	E	N	L	Y	N	S	L	R	L	K	T	D	H	F	A	N	E	S	E
Template Known Secondary structure					G	G	G		S									T													.	.	.		T	T	S		S						S				S							T	T															T					S	S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
			1193	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.																						.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250
Predicted Secondary structure		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	E	R	E	A	F	L	A	A	Q	Q	G	S	T	S	T	E	L	F	T	T	I	E	G	N	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	A	V	R	L	L	T	T	A	H	S	V	P	F	D	G	K	A	T	L	F	V	A	E	R	T	L	Q	E	G	M	S
Query Conservation		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Conservation																																																																																.
Template Sequence		Y	V	K	Y	M	R	N	G	S	F	F	T	N	A	H	S	Q	I	L	Q	N	I	I	D	F	E	R	T	K	G	P	V	R	T	K	M	E	Q	A	Q	N	L	L	C	Y	M	N	M	Q	T	F	A	P	F	L	I	S	N	V	K	F	V	R	K	R	T	I	H	I	V	G	A	R	S	N	W	P	P	.	Q
Template Known Secondary structure									T	S	S		T	T	S																					S	S								T	T	S		G	G	G	T						T	T	G	G	G			S								T	T						.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.
		1251	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.		.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		P	E	R	A	W	S	P	W	I	A	E	L	D	I	Y	R	Q	D	.	C	A	H	V	D	I	I	S	P	G	T	F	E	K	I	G	P	I	I	R	A	T	L	N	R
Query Conservation																				.
Alig confidence																				.											.	.
Template Conservation																															.	.
Template Sequence		N	Q	L	F	L	Q	K	T	L	Q	N	Y	H	L	D	V	I	P	G	G	S	H	L	V	N	V	E	A	P	.	.	D	L	V	I	E	R	I	N	H	H	I	H	E
Template Known Secondary structure											S	S							T	T			T	T					S		.	.
Template Predicted Secondary structure																															.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions