Job Description P11454 Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012 Rank 34 Aligned Residues 388 % Identity 18% Template c2y27B_ PDB info PDB header:ligase Chain: B: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak1 in complex with atp from2 burkholderia cenocepacia Resolution 1.60 Å

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		532	.	.	.	.	.											.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.									.	.	.	.	.	.	.	.	590	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.
Query Sequence		W	L	P	L	D	T	.	.	.	.	.	.	.	.	.	.	G	Y	P	D	D	R	L	K	M	M	L	E	D	A	R	P	S	L	L	I	T	T	D	D	Q	L	P	R	F	S	D	V	P	N	L	T	S	L	C	Y	N	A	P	L	.	.	.	.	.	.	.	.	T	P	Q	G	S	A	P	L	Q	L	S	Q
Query Conservation								.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	P	L	E	P	I	E	T	A	S	R	D	E	L	T	A	L	Q	L	E	R	L	K	W	S	L	R	H	A	Y	D	H	S	P	V	Y	R	R	K	F	D	E	A	G	V	H	P	D	D	L	K	T	L	A	D	L	S	R	F	P	F	T	T	K	G	D	L	R	D	S	Y	P	F	G	X	F	A	V	P
Template Known Secondary structure							G	G	G	G	S																																		T	T			G	G	G		S	S	G	G	G	G	G	G	S			B								T	T	T	T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.				.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence		P	H	H	T	A	Y	I	I	F	T	S	G	S	T	G	R	P	K	G	V	M	V	G	Q	T	A	I	V	N	R	L	L	W	M	Q	N	H	Y	.	.	.	P	L	T	G	E	D	V	V	A	Q	K	T	P	C	S	F	D	V	S	V	W	E	F	F	W	P	F	I	A	G	A	K	L	V	M	A	E	P	E
Query Conservation																																								.	.	.
Alig confidence																																								.	.	.
Template Conservation
Template Sequence		Q	D	R	I	S	R	I	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	A	A	D	I	D	T	W	A	N	L	V	A	R	S	I	R	A	A	G	A	R	R	G	D	K	V	H	V	S	Y	G	Y	G	L	F	T	G	G	L	G	A	H	Y	G	A	E	R	A	G	L	T	V	I	P	F	G	G
Template Known Secondary structure		G	G	G										S	S	S	S																									T	T			T	T							S			S	S	S													T	T								S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	R	D	P	L	A	M	Q	Q	F	F	A	E	Y	G	V	T	T	T	H	F	V	P	S	M	L	A	A	F	V	A	S	L	T	P	Q	T	A	R	Q	S	C	A	T	L	K	Q	V	F	C	S	G	E	A	L	P	A	D	L	C	R	E	W	Q	Q	L	T	G	A	P	L	H	N	L	Y	G	P	T	E
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		G	.	.	Q	T	E	K	Q	V	Q	L	I	Q	D	F	R	P	D	I	I	X	V	T	P	S	Y	X	L	S	I	A	D	E	I	E	R	Q	G	L	D	P	V	Q	S	S	L	R	I	G	I	F	G	A	E	P	W	T	N	D	X	R	V	A	I	E	Q	R	X	G	I	D	A	V	D	I	Y	G	L	S	E
Template Known Secondary structure			.	.															S																			T	T			G	G	G	S	S								S	S															T	S									T	T
Template Predicted Secondary structure			.	.
Template SS confidence
		164			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		751	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.		.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		A	A	V	D	V	S	W	Y	P	A	F	G	E	E	L	A	Q	V	R	G	S	S	V	P	I	G	Y	P	V	W	N	T	G	L	R	I	L	D	.	A	M	M	H	P	V	P	P	G	V	A	G	D	L	Y	L	T	G	I	Q	L	A	Q	G	Y	L	G	R	P	D	L	T	A	S	R	F	I	A	D	P	F
Query Conservation																																								.
Alig confidence																	.	.	.	.	.	.	.	.																.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	X	G	P	G	V	A	S	E	C	V	E	T	K	D	.	.	.	.	.	.	.	.	G	P	T	I	W	E	D	H	F	Y	P	E	I	I	D	P	E	T	G	E	V	L	P	D	G	E	L	G	E	L	V	F	T	S	L	T	K	E	A	L	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T									T	T	T		S	.	.	.	.	.	.	.	.	S					T	T	T								T	T	T			B			T	T	S									S	S		S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.									.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.							.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		A	P	G	E	R	M	Y	R	T	G	D	V	A	R	W	L	D	N	G	.	.	.	.	.	.	A	V	E	Y	L	G	R	S	D	D	Q	L	K	I	R	G	Q	R	I	E	L	G	E	I	D	R	V	M	Q	A	L	P	D	V	E	Q	A	V	T	H	A	C	V	I	N	Q	A	A	A	T	G	G	D	A	R
Query Conservation																					.	.	.	.	.	.
Alig confidence		.	.	.	.																.	.	.	.	.	.																																											.	.	.	.	.	.
Template Conservation		.	.	.	.																																																																.	.	.	.	.	.
Template Sequence		.	.	.	.	I	R	Y	R	T	R	D	L	T	R	L	L	P	G	T	A	R	T	X	R	R	X	E	K	I	T	G	R	S	D	D	X	X	I	V	R	G	V	N	V	F	P	T	Q	I	E	E	Q	L	L	K	Q	R	A	L	A	P	H	Y	Q	I	V	L	.	.	.	.	.	.	T	K	E	G	P	L	D
Template Known Secondary structure		.	.	.	.		S													S	S	S	S	S										G	G	G					T	T													T	T		T	T	B		S							.	.	.	.	.	.				T	T
Template Predicted Secondary structure		.	.	.	.																																																																.	.	.	.	.	.
Template SS confidence
						299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.							.	.	.	.	.	.	.
		904	.	.	.	.	.	910	.	.	.	.	.	.	.	.				.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.				.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.
Predicted Secondary structure																	.	.	.																				.	.	.
Query SS confidence																	.	.	.																				.	.	.
Query Sequence		Q	L	V	G	Y	L	V	S	Q	S	G	L	P	L	D	.	.	.	T	S	A	L	Q	A	Q	L	R	E	T	L	P	P	H	M	V	P	V	.	.	.	V	L	L	Q	L	P	Q	L	P	L	S	A	N	G	K	L	D	R
Query Conservation																	.	.	.																				.	.	.
Alig confidence																	.	.	.																				.	.	.												.
Template Conservation																																																					.
Template Sequence		V	L	T	L	N	V	E	P	C	P	E	T	A	P	D	T	A	A	I	Q	V	A	K	Q	A	L	A	Y	D	I	K	S	L	I	G	V	T	A	V	I	N	V	L	P	V	N	G	I	E	R	S	.	V	G	K	A	R	R
Template Known Secondary structure									B		G	G	G	T	T																															T	T		S				.	S	S	S
Template Predicted Secondary structure																																																					.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.