Job Description P11454 Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012 Rank 29 Aligned Residues 415 % Identity 16% Template c2xhgA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:tyrocidine synthetase a; PDBTitle: crystal structure of the epimerization domain from the initiation2 module of tyrocidine biosynthesis Resolution 1.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	L	V	A	A	Q	P	G	I	W	M	A	E	K	L	S	E	L	P	S	A	W	S	V	A	H	Y	V	E	L	T	G	E	V	D	S	P	L	L	A	R	A	V	V	A	G	L	A	Q	A	D	T	L	R	M	R	F	T	E	D	N	G	E	V	W	Q	W	V	D	D	A	L	T	F	E	L	P	E	I
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		V	P	L	T	P	I	Q	K	.	.	W	F	F	G	K	N	F	T	N	T	G	H	W	N	Q	S	S	V	L	Y	R	P	E	G	F	D	P	K	V	I	Q	S	V	M	D	K	I	I	E	H	H	D	A	L	R	M	V	Y	Q	H	E	N	G	N	V	V	Q	H	N	R	G	L	G	G	Q	L	Y	D	F	F
Template Known Secondary structure										.	.					T	T		T	T	T	T		B									T	T																		S	G	G	G	G						G	G	G									S	S	S
Template Predicted Secondary structure										.	.
Template SS confidence
		17	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	L	R	T	N	I	D	P	H	G	T	A	Q	A	L	M	Q	A	D	L	Q	Q	D	L	R	V	D	S	G	K	P	L	V	F	H	Q	L	I	Q	V	A	D	N	R	W	Y	W	Y	Q	R	Y	H	H	L	L	V	D	G	F	S	F	P	A	I	T	R	Q	I	A	N	I	Y	C	T	W	L	R	G	E
Query Conservation
Alig confidence																																.																		.
Template Conservation																																.																		.
Template Sequence		S	Y	N	L	T	A	Q	P	D	V	Q	Q	A	I	E	A	E	T	Q	R	L	H	S	S	M	N	L	Q	E	G	.	P	L	V	K	V	A	L	F	Q	T	L	H	G	D	H	L	F	.	L	A	I	H	H	L	V	V	D	G	I	S	W	R	I	L	F	E	D	L	A	T	G	Y	A	Q	A	L	A	G	Q
Template Known Secondary structure						T	T		S															T	T			T	T	T		.											T	T						.					G	G	G																						T	T
Template Predicted Secondary structure																																.																		.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		165	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.
Predicted Secondary structure										.																																														.																					.
Query SS confidence										.																																														.																					.
Query Sequence		P	T	P	A	S	P	F	T	.	P	F	A	D	V	V	E	E	Y	Q	Q	Y	R	E	S	E	A	W	Q	R	D	A	A	F	W	A	E	Q	R	R	Q	L	P	P	P	A	S	L	S	P	A	P	L	P	G	.	R	S	A	S	A	D	I	L	R	L	K	L	E	F	T	D	G	E	F	R	.	Q	L	A	T
Query Conservation										.																																														.																					.
Alig confidence										.																																														.																					.
Template Conservation
Template Sequence		A	I	S	L	P	E	K	T	D	S	F	Q	S	W	S	Q	W	L	Q	E	Y	A	N	E	A	D	L	L	S	E	I	P	Y	W	E	S	L	E	S	Q	A	K	N	V	S	L	P	K	D	Y	E	V	T	D	C	K	Q	K	S	V	R	N	M	R	I	R	L	H	P	E	E	T	E	Q	L	L	K	H	A	N
Template Known Secondary structure										S													T	T	S					T	T																			S	S			S	S		B	G	G	G																			T	G	G
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.					.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		Q	L	S	G	V	Q	R	T	D	L	A	L	A	L	A	A	L	W	L	G	R	L	C	N	R	M	D	Y	A	A	G	F	I	F	M	R	R	L	G	S	A	.	.	.	.	A	L	T	A	T	G	P	V	L	N	V	L	P	L	G	I	H	I	A	A	Q	E	T	L	P	E	L	A	T	R	L	A	A	Q	L
Query Conservation																																											.	.	.	.
Alig confidence																																											.	.	.	.
Template Conservation
Template Sequence		Q	A	Y	Q	T	E	I	N	D	L	L	L	A	A	L	G	L	A	F	A	E	W	S	K	L	A	Q	I	V	I	H	L	E	G	H	G	R	E	D	I	I	E	Q	A	N	V	A	R	T	V	G	W	F	T	S	Q	Y	P	V	L	L	D	L	K	Q	T	A	P	L	S	D	Y	I	K	L	T	K	E	N	M
Template Known Secondary structure		G	T	T	T																						S													S		S	T	T				T	T			S													S				S
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.					.	.	.	340	.	.	.	.	.	.	.	.	.	350	.															.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	M	R	R	H	Q	R	Y	D	A	E	Q	I	V	R	D	S	G	.	.	.	.	R	A	A	G	D	E	P	L	F	G	P	V	L	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	F	D	Y	Q	L	D	I	P	D	V	Q	A	Q	T	H	T	L	A	T	G	P	V	N	D	L	E
Query Conservation																					.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																			.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	R	K	I	P	R	K	G	I	G	Y	D	I	L	K	H	V	T	L	P	E	N	R	G	S	L	S	F	R	V	Q	P	E	V	T	F	N	Y	L	G	Q	F	D	A	D	M	R	T	E	L	F	T	R	S	P	Y	S	G	G	N	T	L	G	A	D	G	K	N	N	L	S	P	E	S	E	V	Y	T	A	L
Template Known Secondary structure		.			S	G	G	G	G	T								T	S		G	G	G	S	T	T								S											T	T		S	S	S	S					T	T		T	T			S	S	T	T		T	T	S	B		T	T	S	B				S
Template Predicted Secondary structure		.
Template SS confidence
			333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	F	P	D	V	H	G	D	L	S	I	E	I	L	A	N	K	Q	R	Y	D	E	P	T	L	I	Q	H	A	E	R	L	K	M	L	I	A	Q	F	A	A	D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	I	T	G	L	I	E	G	G	E	L	V	L	T	F	S	Y	S	S	E	Q	Y	R	E	E	S	I	Q	Q	L	S	Q	S	Y	Q	K	H	L	L	A	I	I	A	H	C
Template Known Secondary structure									T	T										T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.