Job Description P11454 Confidence 99.52% Date Thu Jan 5 11:32:39 GMT 2012 Rank 67 Aligned Residues 225 % Identity 12% Template c2qmqA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:protein ndrg2; PDBTitle: crystal structure of a n-myc downstream regulated 2 protein (ndrg2,2 syld, ndr2, ai182517, au040374) from mus musculus at 1.70 a3 resolution Resolution 1.70 Å

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		1062	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.							.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110							.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.																														.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.																														.	.	.	.	.	.
Query Sequence		E	G	N	G	P	T	L	F	C	F	H	P	A	S	G	F	A	W	Q	F	.	.	.	.	.	.	S	V	L	S	R	Y	L	D	P	Q	W	S	I	I	G	I	Q	S	P	R	P	N	G	P	M	Q	T	A	A	.	.	.	.	.	.	N	L	D	E	V	C	E	A	H	L	A	T	L	L	E	Q	Q	P	H
Query Conservation																						.	.	.	.	.	.																														.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																														.	.	.	.	.	.																		.
Template Conservation																																																																																.
Template Sequence		K	P	K	R	P	A	I	F	T	Y	H	D	V	G	L	N	Y	K	S	C	F	Q	P	L	F	R	F	G	D	M	Q	E	I	I	Q	N	F	V	R	V	H	V	D	A	P	G	M	E	E	G	A	P	V	F	P	L	G	Y	Q	Y	P	S	L	D	Q	L	A	D	M	I	P	C	I	L	Q	Y	L	N	.	F
Template Known Secondary structure			T	T										T	T												T	S								T	T	S								T	T	T	S	T	T						T	T												T									T	.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.
		1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170																.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	P	Y	Y	L	L	G	Y	S	L	G	G	T	L	A	Q	G	I	A	A	R	L	R	A	R	G	E	Q	V	A	F	L	G	L	L	D	T	W	P	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	N	W	Q	E	K	E	A	N	G	L	D	P	E	V	L	A	E	I	N	R	E	R
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.
Template Sequence		S	T	I	I	G	V	G	V	G	A	G	A	Y	I	L	S	R	Y	A	L	N	H	P	.	.	.	D	T	V	E	G	L	V	L	I	N	I	D	P	N	A	K	G	W	M	D	W	A	A	H	K	L	T	G	L	T	S	S	I	P	D	M	I	L	G	H	L	F	S	Q	E	E	L	S	G	N	S	E	L	I
Template Known Secondary structure										T														G	.	.	.	G	G								S																			T	T	S											S							T	T
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		1195	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.		.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.		1270	.	.
Predicted Secondary structure																													.																																																	.
Query SS confidence																													.																																																	.
Query Sequence		E	A	F	L	A	A	Q	Q	G	S	T	S	T	E	L	F	T	T	I	E	G	N	Y	A	D	A	V	.	R	L	L	T	T	A	H	S	V	P	F	D	G	K	A	T	L	F	V	A	E	R	T	L	Q	E	G	M	S	P	E	R	A	W	S	P	W	I	A	E	L	D	I	Y	R	Q	D	C	.	A	H	V
Query Conservation																													.																																																	.
Alig confidence																													.																																																	.
Template Conservation
Template Sequence		Q	K	Y	R	G	I	I	Q	H	A	P	N	L	E	N	I	E	L	Y	W	N	S	Y	N	N	R	R	D	L	N	F	E	R	G	G	E	T	T	L	K	C	P	V	M	L	V	V	G	D	Q	A	P	H	E	D	A	V	V	E	C	N	S	K	L	D	P	T	Q	T	S	F	L	K	M	A	D	S	G	G	Q
Template Known Secondary structure										T		T	T													T						S			T	T						S								T	T	S	T	T											S		G	G	G							T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		1273	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	I	S	P	G	T	F	E	K	I	G	P	I	I	R	A	T	L	N
Query Conservation
Alig confidence								.	.
Template Conservation								.	.
Template Sequence		P	Q	L	T	Q	P	.	.	G	K	L	T	E	A	F	K	Y	F	L	Q
Template Known Secondary structure								.	.
Template Predicted Secondary structure								.	.
Template SS confidence
		295	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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