Job Description P11454 Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012 Rank 26 Aligned Residues 419 % Identity 16% Template c2jgpA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrocidine synthetase 3; PDBTitle: structure of the tycc5-6 pcp-c bidomain of the tyrocidine2 synthetase tycc Resolution 1.85 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	L	P	L	V	A	A	Q	P	G	I	W	M	A	E	K	L	S	E	L	P	S	A	W	S	V	A	H	Y	V	E	L	T	G	E	V	D	S	P	L	L	A	R	A	V	V	A	G	L	A	Q	A	D	T	L	R	M	R	F	T	E	D	N	G	E	V	W	Q	W	V	D	D	A	L	T	F	E	L	P
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		A	Y	Y	P	V	S	S	A	Q	K	R	M	Y	I	L	D	Q	F	E	G	V	G	I	S	Y	N	M	P	S	T	M	L	I	E	G	K	L	E	R	T	R	V	E	A	A	F	Q	R	L	I	A	R	H	E	S	L	R	T	S	F	A	V	V	N	G	E	P	V	Q	N	I	H	E	D	V	P	F	A	L	.
Template Known Secondary structure		S	S																	T			T	T	T	T	B																												G	G	G	G							T	T								S							.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	I	D	L	R	T	N	I	D	P	H	G	T	A	Q	A	L	M	Q	A	D	L	Q	Q	D	L	R	V	D	S	G	K	P	L	V	F	H	Q	L	I	Q	V	A	D	N	R	W	Y	W	Y	Q	R	Y	H	H	L	L	V	D	G	F	S	F	P	A	I	T	R	Q	I	A	N	I	Y	C	T	W	L	R
Query Conservation
Alig confidence								.	.	.	.	.	.																					.																																												.	.	.	.
Template Conservation								.	.	.	.	.	.																					.																																												.	.	.	.
Template Sequence		A	Y	S	E	V	T	.	.	.	.	.	.	E	E	E	A	R	E	L	V	S	S	L	V	Q	P	F	D	L	E	V	A	.	P	L	I	R	V	S	L	L	K	I	G	E	D	R	Y	V	L	F	T	D	M	H	H	S	I	S	D	G	V	S	S	G	I	L	L	A	E	W	V	Q	L	Y	Q	.	.	.	.
Template Known Secondary structure								.	.	.	.	.	.											T						T	T	S	S	.												T	T									B	G	G	G																		T	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.																					.																																												.	.	.	.
Template SS confidence
		176	.	.	.	180	.							.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		G	E	P	T	P	A	S	P	F	T	P	F	A	D	V	V	E	E	Y	Q	Q	Y	R	E	S	E	A	W	Q	R	D	A	A	F	W	A	E	Q	R	R	Q	L	P	P	P	A	S	L	S	P	A	P	L	P	G	.	.	R	S	A	S	A	D	I	L	R	L	K	L	E	F	T	D	G	E	F	R	Q	L	A
Query Conservation																																																									.	.
Alig confidence		.																																																							.	.
Template Conservation		.
Template Sequence		.	G	D	V	L	P	E	L	R	I	Q	Y	K	D	F	A	V	W	Q	Q	E	F	S	Q	S	A	A	F	H	K	Q	E	A	Y	W	L	Q	T	F	A	D	D	I	P	V	L	N	L	P	T	D	F	T	R	P	S	T	Q	S	F	A	G	D	Q	C	T	I	G	A	G	K	A	L	T	E	G	L	H	Q	L
Template Known Secondary structure		.	T							S														T	T	S														T	S	S										S	S				S	S				B
Template Predicted Secondary structure		.
Template SS confidence
			245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	L	S	G	V	Q	R	T	D	L	A	L	A	L	A	A	L	W	L	G	R	L	C	N	R	M	D	Y	A	A	G	F	I	F	M	R	R	L	G	S	A	A	L	T	A	T	G	P	V	L	N	V	L	P	L	G	I	H	I	A	A	Q	E	T	L	P	E	L	A	T	R	L	A	A	Q	L	K	K	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	A	T	G	T	T	L	Y	M	V	L	L	A	A	Y	N	V	L	L	A	K	Y	A	G	Q	E	D	I	I	V	G	T	P	I	T	G	R	S	H	A	D	L	E	P	I	V	G	M	F	V	N	T	L	A	M	R	N	K	P	Q	R	E	K	T	F	S	E	F	L	Q	E	V	K	Q	N	A	L	D	A
Template Known Secondary structure						T																				T		S													S	G	G	G	T	T			S														T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.				.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																		.	.																					.	.	.
Query SS confidence																		.	.																					.	.	.
Query Sequence		R	R	H	Q	R	Y	D	A	E	Q	I	V	R	D	S	G	.	.	R	A	A	G	D	E	P	L	F	G	P	V	L	N	I	K	V	F	D	Y	.	.	.	Q	L	D	I	P	D	V	Q	A	Q	T	H	T	L	A	T	G	P	V	N	D	L	E	L	A	L	F	P	D	V	H	G	D	L	S	I	E	I	L
Query Conservation																		.	.																					.	.	.
Alig confidence																		.	.																					.	.	.
Template Conservation
Template Sequence		Y	G	H	Q	D	Y	P	F	E	E	L	V	E	K	L	A	I	A	R	D	L	S	R	N	P	L	F	D	T	V	F	T	F	Q	N	S	T	E	E	V	M	T	L	P	E	C	T	L	A	P	F	M	T	D	E	T	G	Q	H	A	K	F	D	L	T	F	S	A	T	E	E	R	E	E	M	T	I	G	V	E
Template Known Secondary structure				T			S									T						T	T	S		S	S		S											S					S	S							S	S		S	S		S	B		S	S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	K	Q	R	Y	D	E	P	T	L	I	Q	H	A	E	R	L	K	M	L	I	A	Q	F	A	A	D	P	A	L	L	C	G	D	V	D	I	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	S	T	S	L	F	T	R	E	T	M	E	R	F	S	R	H	F	L	T	I	A	A	S	I	V	Q	N	P	H	I	R	L	G	E	I	D	M	L
Template Known Secondary structure				T	T	T																								T	T		B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.