Job Description P11454 Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012 Rank 17 Aligned Residues 502 % Identity 18% Template c2d1tA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:luciferin 4-monooxygenase; PDBTitle: crystal structure of the thermostable japanese firefly2 luciferase red-color emission s286n mutant complexed with3 high-energy intermediate analogue Resolution 1.45 Å

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		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.					.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		Y	A	Q	L	A	Q	L	N	A	T	Q	V	E	I	P	E	T	T	L	S	A	L	V	A	E	Q	A	A	K	T	P	D	A	P	A	L	A	D	A	R	.	.	.	.	Y	L	F	S	Y	R	E	M	R	E	Q	V	V	A	L	A	N	L	L	R	E	R	G	V	K	P	G	D	S	V	A	V	A	L	P	R
Query Conservation																																										.	.	.	.
Alig confidence																																										.	.	.	.													.
Template Conservation																																																										.
Template Sequence		D	E	N	I	V	V	G	P	K	P	F	Y	P	I	E	E	G	S	A	G	T	Q	L	R	K	Y	M	E	R	Y	A	K	L	G	A	I	A	F	T	N	A	V	T	G	V	D	Y	S	Y	A	E	Y	L	E	K	S	.	C	L	G	K	A	L	Q	N	Y	G	L	V	V	D	G	R	I	A	L	C	S	E	N
Template Known Secondary structure			T	T	S							S	S				S	S																	T							T	T	T														.										T			T	T								S	S
Template Predicted Secondary structure																																																										.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	V	F	L	T	L	A	L	H	A	I	V	E	A	G	A	A	W	L	P	L	D	T	G	Y	P	D	D	R	L	K	M	M	L	E	D	A	R	P	S	L	L	I	T	T	D	D	Q	L	P	R	F	S	D	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	E	E	F	F	I	P	V	I	A	G	L	F	I	G	V	G	V	A	P	T	N	E	I	Y	T	L	R	E	L	V	H	S	L	G	I	S	K	P	T	I	V	F	S	S	K	K	G	L	D	K	V	I	T	V	Q	K	T	V	T	T	I	K	T	I	V	I	L	D	S	K	V	D	Y	R	G	Y	Q	C	L
Template Known Secondary structure			T	T	T											T								T	T	S															S						T	T	T											S	T	T							T	T		S	S		B	T	T	B		B
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
			571	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630				.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure		.																																																													.	.	.
Query SS confidence		.																																																													.	.	.
Query Sequence		.	N	L	T	S	L	C	Y	N	A	P	L	T	P	Q	G	S	A	P	L	Q	L	S	Q	P	H	H	T	A	Y	I	I	F	T	S	G	S	T	G	R	P	K	G	V	M	V	G	Q	T	A	I	V	N	R	L	L	W	M	Q	N	H	.	.	.	Y	P	L	T	G	E	D	V	V	A	Q	K	T	P	C	S
Query Conservation		.																																																													.	.	.
Alig confidence		.																																																													.	.	.
Template Conservation
Template Sequence		D	T	F	I	K	R	N	T	P	P	G	Y	Q	A	S	S	F	K	T	V	E	V	D	R	K	E	Q	V	A	L	I	M	N	S	S	G	S	T	G	L	P	K	G	V	Q	L	T	H	E	N	I	V	T	R	F	S	H	A	R	D	P	I	Y	G	N	Q	V	S	P	G	T	A	V	L	T	V	V	P	F	H
Template Known Secondary structure								T	S		T	T			G	G	G								T	T	T	S								S	S		S	S	S																			T		T	T	T	S					T	T							S		T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	V	S	V	W	E	F	F	W	P	F	I	A	G	A	K	L	V	M	A	E	P	E	A	H	R	D	P	L	A	M	Q	Q	F	F	A	E	Y	G	V	T	T	T	H	F	V	P	S	M	L	A	A	F	V	A	S	L	T	P	Q	T	A	R	Q	S	C	A	T	L	K	Q	V	F	C	S	G	E	A	L
Query Conservation
Alig confidence																							.	.	.																																					.	.
Template Conservation																							.	.	.																																					.	.
Template Sequence		H	G	F	G	M	F	T	T	L	G	Y	L	I	C	G	F	R	V	V	M	L	.	.	.	T	K	F	D	E	E	T	F	L	K	T	L	Q	D	Y	K	C	T	N	V	I	L	V	P	T	L	F	A	I	L	N	K	S	E	L	L	.	.	N	K	Y	D	L	S	N	L	V	E	I	A	S	G	G	A	P	L
Template Known Secondary structure		S														T							.	.	.															T	T								G	G	G								S		G	.	.	G	G	S			T	T								S	S
Template Predicted Secondary structure																							.	.	.																																					.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.				.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		727	.	.	730	.	.	.	.	.	.	.	.	.		740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.		.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.
Predicted Secondary structure															.																																																		.
Query SS confidence															.																																																		.
Query Sequence		P	A	D	L	C	R	E	W	Q	Q	L	T	G	.	A	P	L	H	N	L	Y	G	P	T	E	A	A	V	D	V	S	W	Y	P	A	F	G	E	E	L	A	Q	V	R	G	S	S	V	P	I	G	Y	P	V	W	N	T	G	L	R	I	L	D	.	A	M	M	H	P	V	P	P	G	V	A	G	D	L	Y	L
Query Conservation															.																																																		.
Alig confidence															.																												.	.	.	.	.	.	.																.
Template Conservation																																											.	.	.	.	.	.	.
Template Sequence		S	K	E	V	G	E	A	V	A	R	R	F	N	L	P	G	V	R	Q	G	Y	G	L	T	E	T	T	S	A	I	I	I	T	P	E	G	D	D	K	P	G	.	.	.	.	.	.	.	A	S	G	K	V	V	P	L	F	K	A	K	V	I	D	L	D	T	K	K	S	L	G	P	N	R	R	G	E	V	C	V
Template Known Secondary structure													T	T		S									G	G	G	S	S							T	T				T	T	.	.	.	.	.	.	.			B				T	T								T	T	T			B			T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.								.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		805	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	I	Q	L	A	Q	G	Y	L	G	R	P	D	L	T	A	S	R	F	I	A	D	P	F	A	P	G	E	R	M	Y	R	T	G	D	V	A	R	W	L	D	N	G	A	V	E	Y	L	G	R	S	D	D	Q	L	K	I	R	G	Q	R	I	E	L	G	E	I	D	R	V	M	Q	A	L	P	D	V	E	Q
Query Conservation
Alig confidence																									.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.
Template Sequence		K	G	P	M	L	M	K	G	Y	V	N	N	P	E	A	T	K	E	L	I	D	E	E	.	.	.	.	.	.	G	W	L	H	T	G	D	I	G	Y	Y	D	E	E	K	H	F	F	I	V	D	R	L	K	S	L	I	K	Y	K	G	Y	Q	V	P	P	A	E	L	E	S	V	L	L	Q	H	P	S	I	F	D
Template Known Secondary structure			S	T	T	S		S			T	T									B		T	T	.	.	.	.	.	.	S												T	T									G	G	G		B		B	T	T			B											T	S	T	T
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.							.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		885	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.		.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		A	V	T	H	A	C	V	I	N	Q	A	A	A	T	G	G	D	A	R	Q	L	V	G	Y	L	V	S	Q	S	G	L	P	L	D	T	S	A	L	Q	A	Q	L	R	E	T	L	P	P	H	.	M	V	P	V	V	L	L	Q	L	P	Q	L	P	L	S	A	N	G	K	L	D	R	K	A	L	P	L	P	E	L
Query Conservation																																																			.
Alig confidence														.	.	.	.	.	.																																.
Template Conservation														.	.	.	.	.	.
Template Sequence		A	G	V	A	G	V	P	D	P	V	A	G	.	.	.	.	.	.	E	L	P	G	A	V	V	V	L	E	S	G	K	N	M	T	E	K	E	V	M	D	Y	V	A	S	Q	V	S	N	A	K	R	L	R	G	G	V	R	F	V	D	E	V	P	K	G	L	T	G	K	I	D	G	R	A	I	R	E	I	L	K
Template Known Secondary structure										T	T	T		.	.	.	.	.	.											T	T														T	T	S		G	G	G	S		T	T						S	S			B		T	T	S		B
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		469	470	.	.	.	.	.	.	.	.	.	480							.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
		964	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		543	.