Job Description P11454 Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012 Rank 38 Aligned Residues 373 % Identity 15% Template c1q9jA_ PDB info PDB header:ligase Chain: A: PDB Molecule:polyketide synthase associated protein 5; PDBTitle: structure of polyketide synthase associated protein 5 from2 mycobacterium tuberculosis Resolution 2.75 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	L	V	A	A	Q	P	G	I	W	M	A	E	K	L	S	E	L	P	S	A	W	S	V	A	H	Y	V	E	L	T	G	E	V	D	S	P	L	L	A	R	A	V	V	A	G	L	A	Q	A	D	T	L	R	M	R	F	T	E	D	N	G	E	V	W	Q	W	V	D	D	A	L	T	F	E	L	P	E	I
Query Conservation
Alig confidence										.															.
Template Conservation										.															.
Template Sequence		F	P	G	S	V	I	R	K	.	L	S	H	S	E	E	V	F	A	Q	Y	E	V	F	.	T	S	M	T	I	Q	L	R	G	V	I	D	V	D	A	L	S	D	A	F	D	A	L	L	E	T	H	P	V	L	A	S	H	L	E	Q	S	S	D	G	G	W	N	L	V	A	D	D	L	L	H	S	G	I	C	V
Template Known Secondary structure			T	T	S					.											T	T			.									S																			G	G	G	S							T	T	S	S								S	S	S
Template Predicted Secondary structure										.															.
Template SS confidence
		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	L	R	T	N	I	D	P	H	G	T	A	Q	A	L	M	Q	A	D	L	Q	Q	D	L	R	V	D	S	G	K	P	L	V	F	H	Q	L	I	Q	V	A	D	N	R	W	Y	W	Y	Q	R	Y	H	H	L	L	V	D	G	F	S	F	P	A	I	T	R	Q	I	A	N	I	Y	C	T	W	L	R	G	E
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Sequence		I	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	R	L	D	Q	S	.	V	S	L	L	H	L	Q	L	I	L	R	E	G	G	A	E	L	T	L	Y	L	H	H	C	M	A	D	G	H	H	G	A	V	L	V	D	E	L	F	S	R	Y	T	D	A	V	T	T	G
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	.	T		S									S	S	S									G	G	G																							S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template SS confidence
		80	.	.																					.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	P	A	S	P	F	T	P	F	A	D	V	V	E	E	Y	Q	Q	Y	R	E	S	E	A	W	Q	R	D	A	A	F	W	A	E	Q	R	R	Q	L	P	P	P	A	S	L	S	P	A	P	L	P	G	R	S	A	S	A	D	I	L	R	L	K	L	E	F	T	D	G	E	F	R	Q	L	A	T	Q	L	S
Query Conservation
Alig confidence																										.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template Sequence		D	P	G	P	I	T	P	Q	P	T	P	L	S	M	E	A	V	L	A	Q	R	G	I	R	.	.	.	.	.	.	.	K	A	E	R	F	M	S	V	M	Y	.	.	.	.	.	.	.	.	A	Y	P	G	L	P	Q	A	V	P	V	T	R	L	W	L	S	K	Q	Q	T	S	D	L	M	A	F	G	R	E	H
Template Known Secondary structure		S											B									S	S			.	.	.	.	.	.	.			T	T	S	S	T	T	T	T	.	.	.	.	.	.	.	.					S	B																							T	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.								.	.	.	.	.	180	.	.	.	.									.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.								.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																										.	.											.	.	.	.	.	.	.
Query SS confidence																										.	.											.	.	.	.	.	.	.
Query Sequence		G	V	Q	R	T	D	L	A	L	A	L	A	A	L	W	L	G	R	L	C	N	R	M	D	.	.	Y	A	A	G	F	I	F	M	R	R	.	.	.	.	.	.	.	L	G	S	A	A	L	T	A	T	G	P	V	L	N	V	L	P	L	G	I	H	I	A	A	Q	E	T	L	P	E	L	A	T	R	L	A	A
Query Conservation																										.	.											.	.	.	.	.	.	.
Alig confidence																										.	.											.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	S	L	N	A	V	V	A	A	A	I	L	L	T	E	W	Q	L	R	N	T	P	H	V	P	I	P	Y	V	Y	P	V	D	L	R	F	V	L	A	P	P	V	A	P	T	E	A	T	N	L	L	G	A	A	S	Y	L	A	E	I	G	P	N	T	D	I	V	D	L	A	S	D	I	V	A	T	L	R	A
Template Known Secondary structure		T																				T		S	S											T	T	T	T	S	S	S				T	T	T	B	S														S	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	K	K	M	R	R	H	Q	R	Y	D	A	E	Q	I	V	R	D	S	G	R	A	A	G	D	E	P	L	F	G	P	V	L	N	I	K	V	F	D	Y	Q	L	D	I	P	D	V	Q	A	Q	T	H	T	L	A	T	G	P	V	N	D	L	E	L	A	L	F	P	D	V	H	G	D	L	S	I	E	I	L
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		D	L	A	N	G	V	I	Q	Q	S	G	L	H	F	G	T	A	F	E	G	T	.	.	P	P	G	L	P	P	L	V	F	C	T	D	A	T	S	F	P	T	M	R	T	P	P	G	L	E	I	E	D	I	K	G	Q	F	Y	C	S	I	S	V	P	L	D	L	Y	S	C	A	V	Y	A	G	Q	L	I	I	E
Template Known Secondary structure						T					S			B	G	G	G	G	G	G			.	.		S	S	S														S					T	T													B	S	S												T	T
Template Predicted Secondary structure																							.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	K	Q	R	Y	D	E	P	T	L	I	Q	H	A	E	R	L	K	M	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	H	G	H	I	A	E	P	G	K	S	L	E	A	I	R	S	L	L	C	T	V
Template Known Secondary structure				S	S		S	S															T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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