Job Description P11454 Confidence 100.00% Date Thu Jan 5 11:32:39 GMT 2012 Rank 25 Aligned Residues 423 % Identity 25% Template c1l5aA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:amide synthase; PDBTitle: crystal structure of vibh, an nrps condensation enzyme Resolution 2.55 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	A	A	Q	P	G	I	W	M	A	E	K	L	S	E	L	P	S	A	W	S	V	A	H	Y	V	E	L	T	G	E	V	D	S	P	L	L	A	R	A	V	V	A	G	L	A	Q	A	D	T	L	R	M	R	F	T	E	D	N	G	E	V	W	Q	W	V	D	D	A	L	T	F	E	L	P	E	I	I	D
Query Conservation
Alig confidence																																																																								.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.
Template Sequence		M	L	L	A	Q	K	P	F	W	Q	R	H	L	A	Y	P	H	I	N	L	D	T	V	A	H	S	L	R	L	T	G	P	L	D	T	T	L	L	L	R	A	L	H	L	T	V	S	E	I	D	L	F	R	A	R	F	S	A	Q	G	E	L	Y	W	H	P	F	S	P	P	.	.	.	.	.	I	D	Y	Q	D
Template Known Secondary structure				G	G	G										S	T	T	S			S										S	S																T		G	G	G	G					T	T							S	S				.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70						.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	T	N	I	D	P	H	G	T	A	Q	A	L	M	Q	A	D	L	Q	Q	D	L	R	V	D	S	G	K	P	L	V	F	H	Q	L	I	Q	V	A	D	N	R	W	Y	W	Y	Q	R	Y	H	H	L	L	V	D	G	F	S	F	P	A	I	T	R	Q	I	A	N	I	Y	C	T	W	L	R	G	E	P	T
Query Conservation
Alig confidence																														.
Template Conservation																														.
Template Sequence		L	S	I	H	L	E	A	E	P	L	A	W	R	Q	I	E	Q	D	L	Q	R	S	S	T	L	I	D	A	.	P	I	T	S	H	Q	V	Y	R	L	S	H	S	E	H	L	I	Y	T	R	A	H	H	I	V	L	D	G	Y	G	M	M	L	F	E	Q	R	L	S	Q	H	Y	Q	S	L	L	S	G	Q	T	P
Template Known Secondary structure			T	T		T	T														T	S					B	T	S	.		S										T	T										T	T	T																							T
Template Predicted Secondary structure																														.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	S	P	F	T	P	F	A	D	V	V	E	E	Y	Q	Q	Y	R	E	S	E	A	W	Q	R	D	A	A	F	W	A	E	Q	R	R	Q	L	P	P	P	A	S	L	S	P	A	P	L	P	G	R	S	A	S	A	D	I	L	R	L	K	L	E	F	T	D	G	E	F	R	Q	L	A	T	Q	L	S	G	V
Query Conservation
Alig confidence		.																																																			.
Template Conservation		.																																																			.
Template Sequence		.	T	A	A	F	K	P	Y	Q	S	Y	L	E	E	E	A	A	Y	L	T	S	H	R	Y	W	Q	D	K	Q	F	W	Q	G	Y	L	R	E	A	P	D	L	T	L	T	S	A	T	Y	D	P	Q	.	L	S	H	A	V	S	L	S	Y	T	L	N	S	Q	L	N	H	L	L	L	K	L	A	N	A	N	Q	I
Template Known Secondary structure		.																			T	S																T	S					B			T	T			G	G	.	G																									T	T
Template Predicted Secondary structure		.																																																			.
Template SS confidence
			155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	T	D	L	A	L	A	L	A	A	L	W	L	G	R	L	C	N	R	M	D	Y	A	A	G	F	I	F	M	R	R	L	G	S	A	A	L	T	A	T	G	P	V	L	N	V	L	P	L	G	I	H	I	A	A	Q	E	T	L	P	E	L	A	T	R	L	A	A	Q	L	K	K	M	R	R	H	Q	R	Y
Query Conservation
Alig confidence																					.
Template Conservation																					.
Template Sequence		G	W	P	D	A	L	V	A	L	C	A	L	Y	L	E	S	A	E	P	.	D	A	P	W	L	W	L	P	F	M	N	R	W	G	S	V	A	A	N	V	P	G	L	M	V	N	S	L	P	L	L	R	L	S	A	Q	Q	T	S	L	G	N	Y	L	K	Q	S	G	Q	A	I	R	S	L	Y	L	H	G	R	Y
Template Known Secondary structure																			S	T	.	T												T	T	S	G	G	G	G	S		S														T	T		B																		T	T	T	S
Template Predicted Secondary structure																					.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	E	Q	I	V	R	D	S	G	R	A	A	G	D	E	P	L	F	G	P	V	L	N	I	K	V	F	D	Y	Q	L	D	I	P	D	V	Q	A	Q	T	H	T	L	A	T	G	P	V	N	D	L	E	L	A	L	F	P	D	V	H	G	D	L	S	I	E	I	L	A	N	K	Q	R	Y	D	E	P	T	L
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence		R	I	E	Q	I	E	Q	D	Q	G	L	N	A	E	Q	S	Y	F	M	S	P	F	I	N	I	L	P	F	E	S	P	.	H	F	A	D	C	Q	T	E	L	K	V	L	A	S	G	S	A	E	G	I	N	F	T	F	R	G	S	P	Q	H	E	L	C	L	D	I	T	A	D	L	A	S	Y	P	Q	S	H	W
Template Known Secondary structure										T	T			T	T			B				S											.			T	T															S									T	T	S										T	T	T	S
Template Predicted Secondary structure																																	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	H	A	E	R	L	K	M	L	I	A	Q	F	A	A	D	P	A	L	L	C	G	D	V	D	I	M	L	P	G	E	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	H	C	E	R	F	P	R	F	F	E	Q	L	L	A	R	F	Q	Q	V	E	Q	D	V	A	R	L	L	A	E	P	A
Template Known Secondary structure																					T	T	T	T								S	B
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.