|   |
41 | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | K | D | I | S | E | N | A | L | K | V | M | Y | R | L | N | K | A | G | Y | E | A | W | L | V | G | G | G | V | R | D | L | L | L | G | K | K | P | K | D | F | D | V | T | T | N | A | T | P | E | Q | V | R | K | L | F | R | N | C | R | . |
. |
. |
. |
. |
L | V | G | R | R | F | R | L | A | H | V | M | F | G | P |
Query Conservation |   |
  |   |   |
|   |   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|
|
|
|
|
|   |
|
|
|   |
|
|
|   |   |   |   |
|   |
|
|   |
|   |
|   |
|   |   |   |   |   |   |
|   |   |   |   | . | . | . | . | . |   |
|
|   |   |
|   |   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|   |
|
|
|   |
|
|
|
|   |   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
Q | S | L | F | T | E | G | L | K | S | L | T | E | L | F | V | K | E | N | H | E | L | R | I | A | G | G | A | V | R | D | L | L | N | G | V | K | P | Q | D | I | D | F | A | T | T | A | T | P | T | Q | M | K | E | M | F | Q | S | A | G | I | R | M | I | N | N | R | G | E | K | H | G | T | I | T | A | R | L | H | E |
Template Known Secondary structure |   |
 |  |  | S |
| T | T |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  | S | T | T | T |  |  |  |  |  | T | S |
|
| S | S |
|  |  |  |  | S | S |
|  |  |  |  |  |  |  |  | T | T | T | T |
|
| B |
|
|
|
|
| T | T |
|
|
|  |  |  |
| T | T | T |
Template Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . |
  |
  |   |
116 | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | I | I | E | V | A | T | F | R | G | H | H | E | G | N | V | S | D | R | T | T | S | Q | R | G | Q | N | G | M | L | L | R | D | N | I | F | G | S | I | E | E | D | A | Q | R | R | D | F | T | I | N | S | L | Y | Y | S | V | A | D | F | T | V | R | D | Y | V | G | G | M | K | D | L | K | D | G |
Query Conservation |   |
  |   |
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |
|   |   |
|
|   |   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |
|
|
|   |
|
|
|
|
|
|
|
|
|
|   |   |   | . |   |   |   |
|
|
|
|   |
|
|   |   |
|
|   |   |
|
Template Sequence |   |
E | N | F | E | I | T | T | L | R | I | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | T | D | W | Q | K | D | A | E | R | R | D | L | T | I | N | S | M | F | L | G | F | . |
D | G | T | L | F | D | Y | F | N | G | Y | E | D | L | K | N | K |
Template Known Secondary structure |   |
T |
|  |  |  |  |  |
|
| S | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S |
|
| S | S |
|
| G | G | G | S | S | S | G | G | G | S |
|  |  |
| S | . | S |
| B |  |  |
| S | S | S |  |  |  |  | T | T |
|
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
89 | 90 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | |
. | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . |
  |