Job Description P0ABF1 Confidence 100.00% Date Thu Jan 5 11:15:21 GMT 2012 Rank 4 Aligned Residues 368 % Identity 21% Template c3h37B_ PDB info PDB header:transferase Chain: B: PDB Molecule:trna nucleotidyl transferase-related protein; PDBTitle: the structure of cca-adding enzyme apo form i Resolution 2.85 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																.	.	.	.																																														.	.	.	.
Query SS confidence																.	.	.	.																																														.	.	.	.
Query Sequence		K	D	I	S	E	N	A	L	K	V	M	Y	R	L	.	.	.	.	N	K	A	G	Y	E	A	W	L	V	G	G	G	V	R	D	L	L	L	G	K	K	P	K	D	F	D	V	T	T	N	A	T	P	E	Q	V	R	K	L	F	R	N	C	R	.	.	.	.	L	V	G	R	R	F	R	L	A	H	V	M	F
Query Conservation																.	.	.	.																																														.	.	.	.
Alig confidence																.	.	.	.																																														.	.	.	.
Template Conservation
Template Sequence		E	R	V	D	P	K	I	L	N	L	F	R	L	L	G	K	F	G	D	E	V	N	X	P	V	Y	V	V	G	G	F	V	R	D	L	L	L	G	I	K	N	L	D	I	D	I	V	V	E	G	N	A	L	E	F	A	E	Y	A	K	R	F	L	P	G	K	L	V	K	H	D	K	F	X	T	A	S	L	F	L
Template Known Secondary structure				S																		T	T							T									T											S	S												T	S								T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
			114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																														.	.	.
Query SS confidence		.																																																														.	.	.
Query Sequence		.	G	P	E	I	I	E	V	A	T	F	R	G	H	H	E	G	N	V	S	D	R	T	T	S	Q	R	G	Q	N	G	M	L	L	R	D	N	I	F	G	S	I	E	E	D	A	Q	R	R	D	F	T	I	N	S	L	Y	Y	S	V	A	D	.	.	.	F	T	V	R	D	Y	V	G	G	M	K	D	L	K	D
Query Conservation		.																																																														.	.	.
Alig confidence		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	G	L	R	I	D	I	A	T	A	R	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	E	X	S	T	I	K	K	D	L	Y	R	R	D	F	T	I	N	A	X	A	I	K	L	N	P	K	D	F	G	L	L	I	D	F	F	G	G	Y	R	D	L	K	E
Template Known Secondary structure		T	T	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	T							T	S	S	B	G	G	G	S						S	G	G	G	T	T					S	S	S							T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.																						.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		G	V	I	R	L	I	G	N	P	E	T	R	Y	R	E	D	P	V	R	M	L	R	A	V	R	F	A	A	K	L	G	M	R	I	S	P	E	T	A	E	P	I	P	R	L	A	T	L	.	.	L	N	D	I	P	P	A	R	L	F	E	E	S	L	K	L	L	Q	A	G	Y	G	Y	E	T	Y	K	L	L	C
Query Conservation																																																		.	.
Alig confidence											.	.																																						.	.
Template Conservation											.	.
Template Sequence		G	V	I	R	V	L	H	T	L	.	.	S	F	V	D	D	P	T	R	I	L	R	A	I	R	F	E	Q	R	F	D	F	R	I	E	E	T	T	E	R	L	L	K	Q	A	V	E	E	G	Y	L	E	R	T	T	G	P	R	L	R	Q	E	L	E	K	I	L	E	E	K	N	P	L	K	S	I	R	R	X	A
Template Known Secondary structure		T				B	S	S	T	T	.	.						T													T	T																		T	T	G	G	G	S															S	S
Template Predicted Secondary structure											.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	H	L	F	Q	P	L	F	P	T	I	T	R	Y	F	T	E	N	G	D	S	P	M	E	R	I	I	E	Q	V	L	K	N	T	D	T	R	I	H	N	D	M	R	V	N	P	A	F	L	F	A	A	M	F	W	Y	P	L	L	E	T	A	Q	K	I	A	Q	E	S	G	L	T	Y	H	D	A	F	A	L
Query Conservation
Alig confidence																		.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	F	D	V	I	K	H	L	F	P	K	T	Y	Y	T	P	.	.	.	.	.	.	S	X	D	E	K	X	E	N	L	F	R	N	I	P	W	V	E	E	N	F	G	E	V	D	R	F	Y	A	V	L	H	V	F	L	E	F	Y	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T						S	T	T						.	.	.	.	.	.																					S													T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.							.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380						.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																																			.	.	.	.	.
Query SS confidence																																			.	.	.	.	.
Query Sequence		A	M	N	D	V	L	D	E	A	C	R	S	L	A	I	P	K	R	L	T	T	L	T	R	D	I	W	Q	L	Q	L	R	M	.	.	.	.	.	S	R	R	Q	G	K	R	A	W	K	L	L	E	H	P	K	F	R	A	A	Y	D	L	L	A	L	R	A	E	V	E	R	N	A	E	L	Q	R	L	V	K	W
Query Conservation																																			.	.	.	.	.
Alig confidence		.	.	.																															.	.	.	.	.																	.	.	.	.
Template Conservation		.	.	.																																																				.	.	.	.
Template Sequence		.	.	.	E	S	W	K	E	V	R	D	R	Y	S	L	R	R	N	L	I	N	E	I	R	H	V	E	K	S	A	P	A	L	L	E	X	L	S	E	R	V	P	A	S	F	V	Y	P	L	V	K	G	V	S	.	.	.	.	N	E	T	I	C	H	F	L	A	Y	L	S	G	E	K	E	G	L	F	K	S	Y
Template Known Secondary structure		.	.	.											T			S	S																				T	T	T			S	G	G	G					T	T			.	.	.	.									T	T
Template Predicted Secondary structure		.	.	.																																																				.	.	.	.
Template SS confidence
					294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.					.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		423	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		W	G	E	F	Q	V	S	A	.	P	P	D	Q	K	G	M	L	N	E	L	D	E	E	P	S	P	R	R	R	T	R	R	P	R	K	R	A	P	R	R	E	G	T
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		L	L	K	I	K	N	T	K	L	E	K	I	N	G	E	Y	L	I	R	K	G	I	T	S	G	K	I	I	G	E	V	L	E	K	I	L	X	K	K	L	D	G	D
Template Known Secondary structure						T	S	T	T				S	S		S	S	T	T		S	S				S	S													T	T	T
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.