Job Description P0ABF1 Confidence 100.00% Date Thu Jan 5 11:15:21 GMT 2012 Rank 3 Aligned Residues 342 % Identity 24% Template c1vfgB_ PDB info PDB header:transferase/rna Chain: B: PDB Molecule:poly a polymerase; PDBTitle: crystal structure of trna nucleotidyltransferase complexed2 with a primer trna and an incoming atp analog Resolution 2.80 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.
Query SS confidence																																																		.	.	.	.
Query Sequence		V	M	Y	R	L	N	K	A	G	Y	E	A	W	L	V	G	G	G	V	R	D	L	L	L	G	K	K	P	K	D	F	D	V	T	T	N	A	T	P	E	Q	V	R	K	L	F	R	N	.	.	.	.	C	R	L	V	G	R	R	F	R	L	A	H	V	M	F	G	P	E	I	I	E	V	A	T	F	R	G	H
Query Conservation																																																		.	.	.	.
Alig confidence																																																		.	.	.	.
Template Conservation
Template Sequence		V	G	Q	I	A	K	E	M	G	L	R	A	Y	I	V	G	G	V	V	R	D	I	L	L	G	K	E	V	W	D	V	D	F	V	V	E	G	N	A	I	E	L	A	K	E	L	A	R	R	H	G	V	N	V	H	P	F	P	E	F	G	T	A	H	L	K	I	G	K	L	K	L	E	F	A	T	A	R	R	E
Template Known Secondary structure									T	T							T								T	T				S							S	S														T							T	T	T	T							T	T										S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		H	E	G	N	V	S	D	R	T	T	S	Q	R	G	Q	N	G	M	L	L	R	D	N	I	F	G	S	I	E	E	D	A	Q	R	R	D	F	T	I	N	S	L	Y	Y	S	V	A	D	F	.	.	.	T	V	R	D	Y	V	G	G	M	K	D	L	K	D	G	V	I	R	L	I	G	N	P	E	T	R	Y	R
Query Conservation																																																			.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.																								.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template Sequence		T	V	E	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	K	E	D	L	I	R	R	D	F	T	I	N	A	M	A	I	S	V	N	L	E	D	Y	G	T	L	I	D	Y	F	G	G	L	R	D	L	K	D	K	V	I	R	V	L	H	P	V	.	.	S	F	I
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	S	S	B	G	G	G	S							G	G	G	T	T					S	S								T	T				B	S	S	T	T	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template SS confidence
		82	.	.	.	.																						.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		E	D	P	V	R	M	L	R	A	V	R	F	A	A	K	L	G	M	R	I	S	P	E	T	A	E	P	I	P	R	.	.	L	A	T	L	L	N	D	I	P	P	A	R	L	F	E	E	S	L	K	L	L	Q	A	G	Y	G	Y	E	T	Y	K	L	L	C	E	Y	H	L	F	Q	P	L	F	P	T	I	T	R
Query Conservation																																.	.
Alig confidence																																.	.
Template Conservation
Template Sequence		E	D	P	V	R	I	L	R	A	L	R	F	A	G	R	L	N	F	K	L	S	R	S	T	E	K	L	L	K	Q	A	V	N	L	G	L	L	K	E	A	P	R	G	R	L	I	N	E	I	K	L	A	L	R	E	D	R	F	L	E	I	L	E	L	Y	R	K	Y	R	V	L	E	E	I	I	E	G	F	Q	W
Template Known Secondary structure				T	T													T																	T	T	G	G	G	T	S																S	S											T	T						S	T	T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	T	E	N	G	D	S	P	M	E	R	I	I	E	Q	V	L	K	N	T	D	T	R	I	H	N	D	M	R	V	N	P	A	F	L	F	A	A	M	F	W	Y	P	L	L	E	T	A	Q	K	I	A	Q	E	S	G	L	T	Y	H	D	A	F	A	L	A	M	N	D	V	L	D	E	A	C	R	S	L	A
Query Conservation
Alig confidence														.	.	.																											.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.																											.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	E	K	V	L	Q	K	L	Y	A	L	R	.	.	.	K	V	V	D	W	H	A	L	E	F	S	E	E	R	I	D	Y	G	W	L	Y	L	L	I	L	I	.	S	N	L	D	Y	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	H	F	L	E	E	M	S
Template Known Secondary structure														.	.	.										G	G	G	S														.		S			S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							T	T
Template Predicted Secondary structure														.	.	.																											.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.																							.	.	.	.	.	.	.	280	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380						.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence		I	P	K	R	L	T	T	L	T	R	D	I	W	Q	L	Q	L	R	M	.	.	.	.	.	S	R	R	Q	G	K	R	A	W	K	L	L	E	H	P	K	F	R	A	A	Y	D	L	L	A	L	R	A	E	V	E	R	N	A	E	L	Q	R	L	V	K	W	W	G	E	F	Q	V	S	A	P	P	D	Q	K	G
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.																	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.
Template Sequence		A	P	S	W	V	R	E	T	Y	K	F	M	K	F	K	L	G	S	L	K	E	E	L	K	K	A	K	E	N	Y	E	V	Y	R	L	L	K	P	L	H	.	.	.	.	.	.	T	S	V	L	L	L	L	M	L	E	E	E	L	K	E	K	I	K	L	Y	L	E	K	L	R	K	V	K	L	P	L	K	R	E
Template Known Secondary structure																									T	T		S	S	S	T					T	T	G	G	G	G	.	.	.	.	.	.	T							T	T	S	G	G	G															S				T
Template Predicted Secondary structure																																										.	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.							.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		437	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	N	E	L	D	E	E	P	S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	M	N	K	I	K	L	A	A	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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