Job Description P0ABF1 Confidence 100.00% Date Thu Jan 5 11:15:21 GMT 2012 Rank 2 Aligned Residues 360 % Identity 28% Template c1miyB_ PDB info PDB header:translation, transferase Chain: B: PDB Molecule:trna cca-adding enzyme; PDBTitle: crystal structure of bacillus stearothermophilus cca-adding enzyme in2 complex with ctp Resolution 3.52 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	A	L	K	V	M	Y	R	L	N	K	A	G	Y	E	A	W	L	V	G	G	G	V	R	D	L	L	L	G	K	K	P	K	D	F	D	V	T	T	N	A	T	P	E	Q	V	R	K	L	F	R	N	C	R	L	V	G	R	R	F	R	L	A	H	V	M	F	G	P	E	I	I	E	V	A	T	F	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	E	A	L	G	I	I	Q	Q	L	K	Q	H	G	Y	D	A	Y	F	V	G	G	A	V	R	D	L	L	L	G	R	P	I	G	D	V	D	I	A	T	S	A	L	P	E	D	V	M	A	I	F	P	K	T	I	D	V	G	S	K	H	G	T	V	V	V	V	H	K	G	K	A	Y	E	V	T	T	F	K	T
Template Known Secondary structure														T	T							S									T											S	S									S	S	S						T	T	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	E	G	N	V	S	D	R	T	T	S	Q	R	G	Q	N	G	M	L	L	R	D	N	I	F	G	S	I	E	E	D	A	Q	R	R	D	F	T	I	N	S	L	Y	Y	S	V	A	D	F	T	V	R	D	Y	V	G	G	M	K	D	L	K	D	G	V	I	R	L	I	G	N	P	E	T	R	Y	R	E	D
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		D	G	S	V	T	F	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	E	E	D	L	K	R	R	D	F	T	M	N	A	I	A	M	D	E	.	Y	G	T	I	I	D	P	F	G	G	R	E	A	I	R	R	R	I	I	R	T	V	G	E	A	E	K	R	F	R	E	D
Template Known Secondary structure									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S	S	B	G	G	G	S					T	.	T			B			S	S	S								T				B	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		86	.	.	.	90	.	.	.																				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	R	M	L	R	A	V	R	F	A	A	K	L	G	M	R	I	S	P	E	T	A	E	P	I	P	R	L	A	T	L	L	N	D	I	P	P	A	R	L	F	E	E	S	L	K	L	L	Q	A	G	Y	G	Y	E	T	Y	K	L	L	C	E	Y	H	L	F	Q	P	L	F	P	T	I	T	R	Y	F	T	E
Query Conservation
Alig confidence																																																																						.								.	.	.	.
Template Conservation																																																																						.								.	.	.	.
Template Sequence		A	L	R	M	M	R	A	V	R	F	V	S	E	L	G	F	A	L	A	P	D	T	E	Q	A	I	V	Q	N	A	P	L	L	A	H	I	S	V	E	R	M	T	M	E	M	E	K	L	L	G	G	P	F	A	A	R	A	L	P	L	L	A	E	T	G	L	N	A	.	Y	L	P	G	L	A	G	.	.	.	.
Template Known Secondary structure		T	T												T																G	G	G	G	G	G	S													T	T		S	S											S	T	T	T	T	.	S	S	T	T		T	T	.	.	.	.
Template Predicted Secondary structure																																																																						.								.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	D	S	P	M	E	R	I	I	E	Q	V	L	K	N	T	D	T	R	I	H	N	D	M	R	V	N	P	A	F	L	F	A	A	M	F	W	Y	P	L	L	E	T	A	Q	K	I	A	Q	E	S	G	L	T	Y	H	D	A	F	A	L	A	M	N	D	V	L	D	E	A	C	R	S	L	A	I	P	K	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																												.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																												.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	K	E	K	Q	L	R	L	A	A	A	Y	R	W	P	W	L	A	A	R	E	E	R	W	A	L	L	C	.	H	A	L	G	V	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	P	F	L	R	A	W	K	L	P	N	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.								G	G	G	S		G	G	G			S										.				T		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																												.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
												230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.																							.	.	.	.	.	.	270	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.								.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.
Query Sequence		L	T	T	L	T	R	D	I	W	Q	L	Q	L	R	M	S	R	R	Q	G	K	R	A	W	K	L	L	E	H	P	K	F	R	A	A	Y	D	L	L	A	L	R	A	E	V	E	R	N	A	E	L	Q	R	L	V	K	W	W	G	E	F	Q	V	S	A	P	P	.	.	.	.	.	.	.	D	Q	K	G	M	L
Query Conservation																																																																					.	.	.	.	.	.	.
Alig confidence																														.																																							.	.	.	.	.	.	.
Template Conservation																														.
Template Sequence		V	V	D	E	A	G	A	I	L	T	A	L	A	D	I	P	R	P	E	A	W	T	N	E	Q	L	F	S	.	A	G	L	E	R	A	L	S	V	E	T	V	R	A	A	F	T	G	A	P	P	G	P	W	H	E	K	L	R	R	R	F	A	S	L	P	I	K	T	K	G	E	L	A	V	N	G	K	D	V	I
Template Known Secondary structure																		S	G	G	G									.																		S			S											T	T	T	S	S		S	S	S	T	T		S	S
Template Predicted Secondary structure																														.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	L	D	E	E	P	S	P	R	R	R	T	R	R	P	R	K	R	A	P	R	R	E	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	W	V	G	K	P	A	G	P	W	V	K	E	A	L	D	A	I	W	R	A	V	V	N	G	E
Template Known Secondary structure					T			S	S															T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.