Job Description Q47208 Confidence 100.00% Date Thu Jan 5 12:36:39 GMT 2012 Rank 1 Aligned Residues 447 % Identity 96% Template c3dmyA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein fdra; PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli Resolution 2.07 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	T	Q	V	R	R	W	D	S	A	C	Q	K	L	P	D	A	N	L	A	L	I	S	V	A	G	E	Y	A	A	E	L	A	N	Q	A	L	D	R	N	L	N	V	M	M	F	S	D	N	V	T	L	E	D	E	I	Q	L	K	T	R	A	R	E	K	G	L	L	V	M	G	P	D	C	G	T	S	M	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	T	Q	V	R	R	W	D	S	A	C	Q	K	L	P	D	A	N	L	A	L	I	S	V	A	G	E	Y	A	A	E	L	A	N	Q	A	L	D	R	N	L	N	V	X	X	F	S	D	N	V	T	L	E	D	E	I	Q	L	K	T	R	A	R	E	K	G	L	L	V	X	G	P	D	C	G	T	S	X	I
Template Known Secondary structure							S	S								S	T	T								S															T	T																									T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	T	P	L	A	F	A	N	V	M	P	E	G	N	I	G	V	I	G	A	S	G	T	G	I	Q	E	L	C	S	Q	I	A	L	A	G	E	G	I	T	H	A	I	G	L	G	G	R	D	L	S	R	E	V	G	G	I	S	A	L	T	A	L	E	M	L	S	A	D	E	K	S	E	V	L	A	F	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	T	P	L	A	F	A	N	V	X	P	E	G	N	I	G	V	I	G	A	S	G	T	G	I	Q	E	L	C	S	Q	I	A	L	A	G	E	G	I	T	H	A	I	G	L	G	G	R	D	L	S	R	E	V	G	G	I	S	A	L	T	A	L	E	X	L	S	A	D	E	K	S	E	V	L	A	F	V	S
Template Known Secondary structure		T	T					S														S		S													T	T											T	T	T	T	S	T	T	T	T	T												T		T	T
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	P	A	E	A	V	R	L	K	I	V	N	A	M	K	A	T	G	K	P	T	V	A	L	F	L	G	Y	T	P	A	V	A	R	D	E	N	V	W	F	A	S	S	L	D	E	A	A	R	L	A	C	L	L	S	R	V	T	A	R	R	N	A	I	A	P	V	S	S	G	F	I	C	G	L	Y	T	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	P	A	E	A	V	R	L	K	I	V	N	A	X	K	A	T	G	K	P	T	V	A	L	F	L	G	Y	T	P	A	V	A	R	D	E	N	V	W	F	A	S	S	L	D	E	A	A	R	L	A	C	L	L	S	R	V	T	A	R	R	N	A	I	A	P	V	S	S	G	F	I	C	G	L	Y	T	G	G
Template Known Secondary structure		S																			S							T	T				S	S	S			T	T					S	S																									S									S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	A	A	E	A	A	G	L	L	A	G	H	L	G	V	E	A	D	D	T	H	Q	H	G	M	M	L	D	A	D	S	H	Q	I	I	D	L	G	D	D	F	Y	T	V	G	R	P	H	P	M	I	D	P	T	L	R	N	Q	L	I	A	D	L	G	A	K	P	Q	V	R	V	L	L	L	D	V	V	I	G
Query Conservation
Alig confidence																												.	.	.
Template Conservation																												.	.	.
Template Sequence		T	L	A	A	E	A	A	G	L	L	A	G	H	L	G	V	E	T	H	Q	H	G	X	X	L	D	.	.	.	A	D	S	H	Q	I	I	D	L	G	D	D	F	Y	T	V	G	R	P	H	P	X	I	D	P	T	L	R	N	Q	L	I	A	D	L	G	A	K	P	Q	V	R	V	L	L	L	D	V	V	I	G
Template Known Secondary structure															T	T					G	G	G					.	.	.		T	T						T	T	S					T	T	S			T	T	T												G	G	G		T	T											S
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.				.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	A	T	A	D	P	A	A	S	L	V	S	A	W	Q	K	A	C	A	A	R	L	D	N	Q	P	L	Y	A	I	A	T	V	T	G	T	E	R	D	P	Q	C	R	S	Q	Q	I	A	T	L	E	D	A	G	I	A	V	V	S	S	L	P	E	A	T	L	L	A	A	A	L	I	H	P	L	S	P	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	G	A	T	A	D	P	A	A	S	L	V	S	A	W	Q	K	A	C	A	A	R	L	D	N	Q	P	L	Y	A	I	A	T	V	T	G	T	E	R	D	P	Q	C	R	S	Q	Q	I	A	T	L	E	D	A	G	I	A	V	V	S	S	L	P	E	A	T	L	L	A	A	A	L	I	H	P	L	S	H	T	P
Template Known Secondary structure		T	T	S		S																T	S		T	T	S										S		T	T	S	T	T												T	T					S	S												T	S
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	H	T	P	S	L	L	E	N	V	A	V	I	N	I	G	L	R	S	F	A	L	E	L	Q	S	A	S	K	P	V	V	H	Y	Q	W	S	P	V	A	G	G	N	K	K	L	A	R	L	L	E	R	L	Q
Query Conservation
Alig confidence			.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		S	.	.	.	.	.	L	L	E	N	V	A	V	I	N	I	G	L	R	S	F	A	L	E	L	Q	S	A	S	K	P	V	V	H	Y	Q	W	S	P	V	A	G	G	N	K	K	L	A	R	L	L	E	R	L	Q
Template Known Secondary structure			.	.	.	.	.											S											T	T										S	S		T	T
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		506						.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.