Job Description Q47208 Confidence 100.00% Date Thu Jan 5 12:36:39 GMT 2012 Rank 2 Aligned Residues 399 % Identity 17% Template c2csuB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:457aa long hypothetical protein; PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3 Resolution 2.20 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.															.	.	.	.																										.
Query SS confidence															.															.	.	.	.																										.
Query Sequence		V	A	I	R	S	E	A	A	D	A	G	I	A	.	Q	A	I	M	Q	Q	L	E	E	A	L	K	Q	L	.	.	.	.	A	Q	G	S	G	S	S	Q	A	L	T	Q	V	R	R	W	D	S	A	C	Q	K	L	P	D	.	A	N	L	A	L	I	S	V	A	G	E	Y	A	A	E	L	A	N	Q	A	L	D
Query Conservation															.															.	.	.	.																										.
Alig confidence															.															.	.	.	.																	.	.	.	.						.
Template Conservation																																																		.	.	.	.
Template Sequence		I	A	V	I	G	A	S	N	D	P	K	K	L	G	Y	E	V	F	K	N	L	K	E	Y	K	K	G	K	V	Y	P	V	N	I	K	E	E	E	V	Q	G	V	K	A	Y	K	S	V	.	.	.	.	K	D	I	P	D	E	I	D	L	A	I	I	V	V	P	K	R	F	V	K	D	T	L	I	Q	C	G	E
Template Known Secondary structure						T			S		T	T	S										T	T			S	S							T	T		S	B	S	S	S	S	B		B	S	S	T	.	.	.	.	T			S	S			S						S		G	G	G
Template Predicted Secondary structure																																																		.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		140	.	.	.		.	.	.	.	.	.	150	.	.	.							.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure						.											.	.	.	.	.	.																													.	.
Query SS confidence						.											.	.	.	.	.	.																													.	.
Query Sequence		R	N	L	N	.	V	M	M	F	S	D	N	V	T	L	.	.	.	.	.	.	E	D	E	I	Q	L	K	T	R	A	R	E	K	G	L	L	V	M	G	P	D	C	G	T	S	M	I	A	.	.	G	T	P	L	A	F	A	N	V	M	P	E	G	N	I	G	V	I	G	A	S	G	T	G	I	Q	E	L	C
Query Conservation						.											.	.	.	.	.	.																													.	.
Alig confidence						.											.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence		K	G	V	K	G	V	V	I	I	T	A	G	F	G	E	T	G	E	E	G	K	R	E	E	K	E	L	V	E	I	A	H	K	Y	G	X	R	I	I	G	P	N	C	V	G	I	X	N	T	H	V	D	L	N	A	T	F	I	T	V	A	K	K	G	N	V	A	F	I	S	Q	S	G	A	L	G	A	G	I	V
Template Known Secondary structure			T										S	S	G	G	G																		T	T						S	S	S						G	G	G	T					S	S							S						S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	I	A	L	A	G	E	G	I	T	H	A	I	G	L	G	G	R	D	L	S	R	E	V	G	G	I	S	A	L	T	A	L	E	M	L	S	A	D	E	K	S	E	V	L	A	F	V	S	K	P	P	A	E	A	V	R	L	K	I	V	N	A	M	K	A	T	G	K	P	T	V	A	L	F	L	G	Y	T
Query Conservation
Alig confidence																					.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		Y	K	T	I	K	E	D	I	G	F	S	K	F	I	S	V	G	N	X	.	.	.	.	.	.	A	D	V	D	F	A	E	L	X	E	Y	L	A	D	T	E	E	D	K	A	I	A	L	Y	I	E	G	V	R	N	G	K	K	F	X	E	V	A	K	R	V	T	K	K	K	P	I	I	A	L	K	A	G	K	K
Template Known Secondary structure							T	T				S						T	T		.	.	.	.	.	.	S	S	S											T		S	S									S			S													T	T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
				291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340								.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure		.	.																																																			.	.	.	.	.	.	.
Query SS confidence		.	.																																																			.	.	.	.	.	.	.
Query Sequence		.	.	P	A	V	A	R	D	E	N	V	W	F	A	S	S	L	D	E	A	A	R	L	A	C	L	L	S	R	V	T	A	R	R	N	A	I	A	P	V	S	S	G	F	I	C	G	L	Y	T	G	G	.	.	.	.	.	.	.	T	L	A	A	E	A	A	G	L	L	A	G	H	L	G	V	E	A	D	D	T
Query Conservation		.	.																																																			.	.	.	.	.	.	.
Alig confidence		.	.																														.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.
Template Sequence		I	Y	E	A	A	F	K	Q	S	G	V	L	V	A	N	T	I	D	E	X	L	S	X	A	R	A	F	S	Q	P	L	.	.	.	.	.	.	.	.	P	R	G	N	K	V	A	I	X	T	N	A	G	G	P	G	V	L	T	A	D	E	L	D	K	R	G	L	K	L	A	T	L	E	E	K	T	I	E	E	L
Template Known Secondary structure											T					S	S										G	G	G	S			.	.	.	.	.	.	.	.		S	S								S													T	T	T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290									.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	H	G	M	M	L	D	A	D	S	H	Q	I	I	D	L	G	D	D	F	Y	T	V	G	R	P	H	P	M	I	D	P	T	L	R	N	Q	L	I	A	D	L	G	A	K	P	Q	V	R	V	L	L	L	D	V	V	I	G	F	G	A	T	A	D	P	A	A	S	L	V	S	A	W	Q	K	A	C	A	A
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	F	L	P	P	X	A	A	V	K	N	P	V	D	X	I	A	S	A	.	.	.	.	.	.	.	.	.	.	.	R	G	E	D	Y	Y	R	T	A	K	L	L	L	Q	D	P	N	V	D	X	L	I	A	I	C	V	V	P	T	F	A	G	X	T	L	T	E	H	A	E	G	I	I	R	A	V	K	E	V
Template Known Secondary structure					S		T	T				S	S						T	T		.	.	.	.	.	.	.	.	.	.	.																T	T		S											S	T	T			S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.												.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	D	N	Q	P	L	Y	A	I	A	T	V	T	G	T	E	R	D	P	Q	C	R	S	Q	Q	I	A	T	L	E	D	A	G	I	A	V	V	S	S	L	P	E	A	T	L	L	A	A	A	L	I	H	P	L	S	P	A	A
Query Conservation
Alig confidence		.	.	.															.	.	.	.
Template Conservation		.	.	.															.	.	.	.
Template Sequence		.	.	.	N	N	E	K	P	V	L	A	X	F	X	A	G	Y	.	.	.	.	V	S	E	K	A	K	E	L	L	E	K	N	G	I	P	T	Y	E	R	P	E	D	V	A	S	A	A	Y	A	L	V	E	Q	A	K	N	V	G
Template Known Secondary structure		.	.	.															.	.	.	.												T	T					S	S
Template Predicted Secondary structure		.	.	.															.	.	.	.
Template SS confidence
					401	.	.	.	.	.	.	.	.	410	.	.	.	.					.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.