Job Description P39334 Confidence 99.85% Date Thu Jan 5 11:59:26 GMT 2012 Rank 81 Aligned Residues 182 % Identity 13% Template c3s5rA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator tetr family; PDBTitle: crystal structure of a putative transcriptional regulator of the tetr2 family (syn_02108) from syntrophus aciditrophicus at 2.60 a3 resolution Resolution 2.60 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		R	F	A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	D	D	R	.	P	V	G	E	C	L
Query Conservation																																																																											.
Alig confidence																																																																											.
Template Conservation
Template Sequence		K	N	T	R	E	L	L	L	D	A	A	T	T	L	F	A	E	Q	G	I	A	A	T	T	X	A	E	I	A	A	S	V	G	V	N	P	A	X	I	H	Y	Y	F	K	T	R	D	S	L	L	D	T	I	I	E	E	R	I	G	R	I	I	D	X	I	W	E	P	V	T	G	E	E	D	D	P	L	I	X	V
Template Known Secondary structure																					T	T	T									T	T	T											S	S												T										T	T			S			S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.
Query Sequence		V	E	V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	G	C	M	V	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	R	.	.	.	.	.	.	.	H	P	Q	R	A	Q	C	V	T	D	F	M	S	T	V	M	S	G
Query Conservation																																																									.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	L	V	N	R	I	V	N	T	C	E	T	X	L	W	L	P	S	L	W	I	R	E	I	V	N	E	G	G	A	L	R	E	K	X	L	N	N	I	P	I	D	K	X	N	K	F	S	A	K	I	A	E	G	Q	K	Q	G	V	I	N	S	G	I	D	S	R	L	L	I	G	S	I	I	G	L	T	X	L
Template Known Secondary structure																T										T	T	S	T	T		S	S						T	T																				T	S	S		T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		167	.	.	170	.						.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence		L	S	A	K	A	.	.	.	.	.	R	E	G	H	S	I	E	Q	L	C	A	T	A	A	M	A	G	E	A	I	K	T	I	L	E
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.
Template Conservation
Template Sequence		P	L	A	T	A	K	L	R	D	Q	I	P	T	X	K	G	L	S	S	E	D	I	V	C	H	V	T	A	L	L	F	T	G	L	T
Template Known Secondary structure					T					T	T	S	G	G	G																		T		S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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