Job Description P39334 Confidence 99.92% Date Thu Jan 5 11:59:26 GMT 2012 Rank 5 Aligned Residues 185 % Identity 15% Template c3qbmA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:tetr transcriptional regulator; PDBTitle: crystal structure of a tetr transcriptional regulator (caur_2221) from2 chloroflexus aurantiacus j-10-fl at 1.80 a resolution Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	R	R	F	A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	D	D	R	P	V	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	K	G	Q	E	T	R	E	R	V	V	A	Q	A	A	A	L	F	N	V	S	G	Y	A	G	T	A	I	S	D	I	X	A	A	T	G	L	E	K	G	G	I	Y	R	H	F	E	S	K	E	Q	L	A	L	A	A	F	D	Y	A	A	E	K	V	R	E	R	F	A	V	G	L	A	G	H	K	H	T	V	D
Template Known Secondary structure																								S	T	T											T								T	T		S	S																									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																						.	.	.																																						.	.	.	.	.	.	.
Query SS confidence																						.	.	.																																						.	.	.	.	.	.	.
Query Sequence		C	L	V	E	V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	.	.	.	G	C	M	V	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	R	.	.	.	.	.	.	.	H	P	Q	R	A	Q	C	V	T	D	F	M	S
Query Conservation																						.	.	.																																						.	.	.	.	.	.	.
Alig confidence																						.	.	.																																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	I	A	F	L	D	V	F	R	S	Y	A	E	R	P	P	L	V	G	G	C	P	I	L	N	T	A	I	E	S	D	D	T	N	P	X	L	R	E	R	V	R	A	V	I	D	E	W	R	E	T	I	R	T	L	V	Q	T	G	I	A	R	G	E	I	R	P	E	V	D	A	D	R	L	A	L	L	I	I
Template Known Secondary structure												G	G	G	T			S	B	T	T	B											T	T	T																													T	T	S	B		T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	M	S	G	L	S	A	K	A	R	E	G	H	S	I	E	Q	L	C	A	T	A	A	M	A	G	E	A	I	K	T	I	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	X	E	G	A	V	X	L	A	R	I	L	E	T	A	T	P	L	E	H	A	Y	T	H	L	A	T	Y	I	T	Q	Q	V	R
Template Known Secondary structure															T	S	S																		T	B
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions