Job Description P39334 Confidence 99.90% Date Thu Jan 5 11:59:26 GMT 2012 Rank 22 Aligned Residues 181 % Identity 14% Template c3pasA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:tetr family transcription regulator; PDBTitle: crystal structure of a tetr family transcription regulator (maqu_1417)2 from marinobacter aquaeolei vt8 at 1.90 a resolution Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		G	R	P	R	.	R	F	A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	D	D	R	P	V
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		X	R	Q	R	D	D	S	K	R	I	A	F	L	E	A	T	V	R	E	V	A	D	H	G	F	S	A	T	S	V	G	K	I	A	K	A	A	G	L	S	P	A	T	L	Y	I	Y	Y	E	D	K	E	Q	L	L	L	A	T	F	Y	Y	V	S	D	Q	V	I	D	A	A	L	D	S	F	S	R	G	K	D	L
Template Known Secondary structure																																							T	S										S	S																										T		S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																												.																																		.	.
Query SS confidence																												.																																		.	.
Query Sequence		G	E	C	L	V	E	V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	G	C	M	V	.	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	R	.	.	H	P	Q	R	A	Q	C	V	T	D	F	M	S	T	V	M	S	G
Query Conservation																												.																																		.	.
Alig confidence																												.																																		.	.
Template Conservation
Template Sequence		R	E	G	L	R	R	Q	W	H	T	L	F	R	I	G	L	E	R	P	E	L	F	R	Y	H	E	T	F	T	H	S	A	W	X	T	P	E	I	Q	A	R	N	E	S	R	A	A	N	L	L	N	A	V	D	Q	G	K	Q	S	G	L	I	K	P	V	P	F	P	L	L	E	T	F	X	F	R	P	I	Y	H
Template Known Secondary structure																															T	S	T	T													T														T	S	B													T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		167	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		L	S	A	K	A	R	E	G	.	.	.	H	S	I	E	Q	L	C	A	T	A	A	M	A	G	E	A	I
Query Conservation										.	.	.
Alig confidence										.	.	.
Template Conservation
Template Sequence		L	V	Q	R	C	L	Q	G	S	F	E	G	T	D	E	H	I	E	L	A	F	N	X	A	W	D	A	V
Template Known Secondary structure								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions