Job Description P39334 Confidence 99.89% Date Thu Jan 5 11:59:26 GMT 2012 Rank 25 Aligned Residues 169 % Identity 15% Template c3knwB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator (tetr/acrr family); PDBTitle: crystal structure of a putative transcriptional regulator (tetr/acrr2 family member) from putative transcriptional regulator (tetr/acrr3 family) Resolution 2.45 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	D	D	R	P	V	G	E	C	L	V	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	Q	H	I	L	D	S	G	F	H	L	V	L	R	K	G	F	V	G	V	G	L	Q	E	I	L	K	T	S	G	V	P	K	G	S	F	Y	H	Y	F	E	S	K	E	A	F	G	C	E	L	L	K	H	Y	I	S	D	Y	Q	I	R	L	N	Q	L	W	T	T	E	T	S	A	R	D	K	L	X	N	Y
Template Known Secondary structure																			S	T	T									T	T				S	T	T						S																										S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.
Query Sequence		L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	G	C	M	V	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	.	.	.	.	.	.	.	R	H	P	Q	R	A	Q	C	V	T	D	F	M	S	T	V	M	S	G	L	S	A
Query Conservation																																																					.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																																						.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.
Template Sequence		L	Q	C	W	V	K	S	C	.	.	.	.	.	.	L	I	V	K	X	A	A	E	V	A	D	L	S	E	D	X	R	L	I	X	N	D	G	V	K	R	L	I	A	R	X	A	D	L	I	R	I	G	Q	Q	E	G	S	I	Q	T	S	V	V	P	D	V	L	A	Q	V	I	Y	Q	X	Y	L	G	A	A	L
Template Known Secondary structure				T	T	T				.	.	.	.	.	.							T	T	T	T	T	S																														T	S	S				S
Template Predicted Secondary structure										.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.							100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	R	E	G	H	S	I	E	Q	L	C	A	T	A	A	M	A	G	E	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	K	L	Y	K	H	K	A	P	L	F	Q	A	L	E	S	T	K	X	X	L
Template Known Secondary structure							T	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions