Job Description P39334 Confidence 99.91% Date Thu Jan 5 11:59:26 GMT 2012 Rank 8 Aligned Residues 175 % Identity 19% Template c3jsjC_ PDB info PDB header:transcription Chain: C: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of a putative tetr-transcriptional regulator2 (sav143) from streptomyces avermitilis ma-4680 at 2.10 a resolution Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	D	D	R	P	V	G	E	C	L	V
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		Q	S	P	R	E	R	L	L	E	A	A	A	A	L	T	Y	R	D	G	V	.	G	I	G	V	E	A	L	C	K	A	A	G	V	S	K	R	S	X	Y	Q	L	F	E	S	K	D	E	L	L	A	A	S	L	K	E	R	S	A	A	F	V	A	K	A	L	P	P	A	D	D	G	R	S	P	R	E	R	I	L
Template Known Secondary structure																					T	.	T											T											S																						S			T	T
Template Predicted Secondary structure																						.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		E	V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	.	.	C	A	G	C	M	V	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	R	H	P	Q	R	A	Q	C	V	T	D	F	M	S	T	V	M	S	G	L	S	A	K	A	R
Query Conservation																	.	.
Alig confidence																	.	.
Template Conservation
Template Sequence		Y	V	F	E	R	V	E	S	Q	A	G	A	P	D	F	Q	G	C	R	Y	L	A	V	Q	I	E	L	K	D	Q	A	H	P	A	S	R	V	A	Y	Q	I	K	A	D	L	X	A	F	F	R	S	E	A	E	R	G	G	A	S	D	P	D	L	L	A	R	Q	L	I	L	V	F	D	G	A	S	A	R	A	G
Template Known Secondary structure												T		T	T			S													T	T	S																								T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		173	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		E	G	H	S	I	E	.	.	Q	L	C	A	T	A	A	M	A	G	E	A
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		I	G	A	D	N	L	T	G	L	I	V	P	T	L	T	T	L	L	D	A
Template Known Secondary structure		T	T	S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions