Job Description P39334 Confidence 99.85% Date Thu Jan 5 11:59:26 GMT 2012 Rank 79 Aligned Residues 168 % Identity 12% Template c3colB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of putative transcription regulator from2 lactobacillus plantarum Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	.	.	A	I	P	L	A	D	I	L	R	D	D	R	P	V	G	E	C	L	V
Query Conservation																																																													.	.
Alig confidence																																																													.	.
Template Conservation
Template Sequence		K	Q	V	K	I	Q	D	A	V	A	A	I	I	L	A	E	G	P	A	G	V	S	T	T	K	V	A	K	R	V	G	I	A	Q	S	N	V	Y	L	Y	F	K	N	K	Q	A	L	I	D	S	V	Y	A	R	E	T	N	R	I	L	S	T	T	D	L	D	R	L	S	D	S	T	I	D	V	T	T	R	I	R
Template Known Secondary structure																			G	G	G											T	S							T	T			S																	S									T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	G	C	M	V	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	R	H	P	Q	R	A	Q	C	V	T	D	F	M	S	T	V	M	S	G	L	S	A	K	A	R	E	G
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	V	Q	Q	V	Y	D	Y	S	L	A	N	P	D	S	L	T	I	I	Q	Q	I	K	A	L	N	P	N	N	I	V	A	N	L	L	T	A	A	I	D	A	.	.	.	.	.	.	.	.	.	K	V	I	K	Q	L	P	V	S	L	H	X	G	V	V	F	S	T	I	H	T	H	T	T	N	I	S	K	G
Template Known Secondary structure														S	T	T																											T	.	.	.	.	.	.	.	.	.	T	S	B		S	S																						T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.										130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
					175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	H	S	I	E	Q	L	C	A	T	A	A	M	A	G	E	A	I	K	T
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		R	Y	A	Q	D	Q	Y	T	F	G	D	I	F	Q	X	I	W	D	A	X	K	Q
Template Known Secondary structure		S	S		T	T	S	S														B
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions