Job Description P39334 Confidence 99.86% Date Thu Jan 5 11:59:26 GMT 2012 Rank 67 Aligned Residues 153 % Identity 16% Template c3aqsD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:bacterial regulatory proteins, tetr family; PDBTitle: crystal structure of rolr (ncgl1110) without ligand Resolution 3.60 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	D	D	R	P	V	G	E	C	L	V	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	A	R	L	I	T	S	A	R	T	L	M	A	E	R	G	V	D	N	V	G	I	A	E	I	T	E	G	A	N	I	G	T	G	T	F	Y	N	Y	F	P	D	R	E	Q	L	L	Q	A	V	A	E	D	A	F	E	S	V	G	I	A	L	D	Q	V	L	T	K	L	D	D	P	A	E	V	F	A	G	S
Template Known Secondary structure																T	T		T	T											T	T	S		T	G	G	G	G	G	T		S	S																					T	T	T	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	G	C	M	V	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	R	.	.	H	P	Q	R	A	Q	C	V	T	D	F	M	S	T	V	M	S	G	L	S	A	K	A	R	E	G
Query Conservation																																																						.	.
Alig confidence																				.	.	.	.	.																														.	.
Template Conservation																				.	.	.	.	.
Template Sequence		L	R	H	L	V	R	H	S	L	E	D	R	I	W	G	G	F	F	.	.	.	.	.	I	Q	M	G	A	A	H	P	V	L	M	R	I	L	G	P	R	A	R	R	D	L	L	H	G	L	E	T	G	R	F	T	I	E	D	L	D	L	A	T	T	C	T	F	G	S	L	I	A	A	I	Q	M	A	L	S	K
Template Known Secondary structure																				.	.	.	.	.	T	T		T	T																								T	S	B			S
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions