Job Description P39334 Confidence 99.88% Date Thu Jan 5 11:59:26 GMT 2012 Rank 43 Aligned Residues 179 % Identity 15% Template c2qtqB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution Resolution 1.85 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	D	D	R	.	P	V	G	E	C	L	V	E
Query Conservation																																																																									.
Alig confidence																																																																									.
Template Conservation
Template Sequence		A	R	D	L	L	L	Q	T	A	S	N	I	X	R	E	G	D	V	V	D	I	S	L	S	E	L	S	L	R	S	G	L	N	S	A	L	V	K	Y	Y	F	G	N	K	A	G	L	L	K	A	L	L	D	R	D	X	E	N	I	V	K	S	V	D	A	L	L	A	K	D	D	X	S	P	E	A	K	L	R	R
Template Known Secondary structure																		T		S												T											S	S																									S			S	S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.							150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.
Query Sequence		V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	G	C	M	V	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	R	H	.	.	.	.	.	.	P	Q	R	A	Q	C	V	T	D	F	M	S	T	V	M	S	G	L	S	A
Query Conservation																																																								.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.
Template Conservation
Template Sequence		H	I	S	K	C	I	D	T	Y	Y	D	Y	P	Y	L	N	R	L	L	X	R	L	V	R	D	S	D	E	A	E	A	K	R	I	A	D	Q	Y	L	L	P	L	H	R	A	Y	N	R	F	I	G	E	G	V	K	A	G	V	F	R	P	I	N	P	Q	L	F	Y	F	T	V	T	G	A	A	D	R	F	F	S
Template Known Secondary structure														T	T																									T																	T	T	S	B														T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		170	.									.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.
Query Sequence		K	A	.	.	.	.	.	.	.	.	R	E	G	H	S	I	E	Q	L	C	A	T	A	A	M	A	G	E	A	I	K	T	I	L
Query Conservation				.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	L	V	L	K	H	C	F	D	Q	D	T	L	T	E	Q	L	R	D	S	Y	R	E	H	T	V	D	F	I	X	A	G	I
Template Known Secondary structure										S			S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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