Job Description P39334 Confidence 99.85% Date Thu Jan 5 11:59:26 GMT 2012 Rank 77 Aligned Residues 183 % Identity 14% Template c2qcoA_ PDB info PDB header:transcription Chain: A: PDB Molecule:cmer; PDBTitle: crystal structure of the transcriptional regulator cmer from2 campylobacter jejuni Resolution 2.25 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		V	P	G	R	P	R	R	F	A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	.	.	D	D
Query Conservation																																																																														.	.
Alig confidence																																																																														.	.
Template Conservation
Template Sequence		T	P	S	Q	K	V	L	A	R	Q	E	K	I	K	A	V	A	L	E	L	F	L	T	K	G	Y	Q	E	T	S	L	S	D	I	I	K	L	S	G	G	S	Y	S	N	I	Y	D	G	F	K	S	K	E	G	L	F	F	E	I	L	D	D	I	C	K	K	H	F	H	L	I	Y	S	K	T	Q	E	I	K	N
Template Known Secondary structure																									T	T	T	T	T												T	T		T	T		S	S	S	T	T	S																										T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.	.	.	.	160
Predicted Secondary structure																															.																																					.	.	.	.	.
Query SS confidence																															.																																					.	.	.	.	.
Query Sequence		R	P	V	G	E	C	L	V	E	V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	G	C	M	V	.	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	R	H	P	Q	.	.	.	.	.	R	A	Q	C	V	T	D	F	M
Query Conservation																															.																																					.	.	.	.	.
Alig confidence																															.																																					.	.	.	.	.
Template Conservation
Template Sequence		G	T	L	K	E	I	L	T	S	F	G	L	A	F	I	E	I	F	N	Q	P	E	A	V	A	F	G	K	I	I	Y	S	Q	V	Y	D	K	D	R	H	L	A	N	W	I	E	N	N	Q	Q	N	F	S	Y	N	I	L	M	G	F	F	K	Q	Q	N	N	S	Y	M	K	K	N	A	E	K	L	A	V	L	F
Template Known Secondary structure		S																		T	S													G	G	G		S	S										S	T	T	S	S	T										S	S	S							T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		S	T	V	M	S	G	L	S	A	K	A	R	.	.	.	.	.	E	G	H	S	I	E	Q	L	C	A	T	A	A	M	A	G	E	A	I
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.
Template Conservation
Template Sequence		C	T	M	L	K	E	P	Y	H	H	L	N	V	L	I	N	A	P	L	K	N	K	K	E	Q	K	E	H	V	E	F	V	V	N	V	F
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions