 |
Job Description | P39334 | Confidence | 49.76% | Date | Thu Jan 5 11:59:26 GMT 2012 |
Rank | 390 | Aligned Residues | 40 |
% Identity | 10% | Template | c2fe3B_ |
PDB info |
PDB header:dna binding protein | Chain: B: PDB Molecule:peroxide operon regulator; |
PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch
|
Resolution | 1.75 Å |
|
  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 50 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . | . |
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | R | P | R | R | F | A | P | E | Q | A | I | S | A | A | K | V | L | F | H | Q | K | G | F | D | A | V | S | V | A | E | V | T | D | Y | L | . |
. |
. |
. |
. |
G | I | N | P | P | S | L | Y | A |
Query Conservation |   |
  |
|   |   |   |   |   |
|   |   |
|
|   |
|
|   |   |
|
|   |   |   |
|   |   |   |   |
|   |   |   |
|
|   |   |
| . | . | . | . | . |
|
|
|   |   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |   |
|   |   |
| . | . | . | . |
|   |   |
|   |   |   |   | . |   |   |   |
|
|   |
|
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|
|
|
|
Template Sequence |   |
G | V | R | I | T | P | Q | R | H | A | I | . |
. |
. |
. |
L | E | Y | L | V | N | S | M | . |
A | H | P | T | A | D | D | I | Y | K | A | L | E | G | K | F | P | N | M | S | V | A | T | V | Y | N |
Template Known Secondary structure |   |
T |
|
|
|
|  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |
| S | . | S |
|
| B |  |  |  |  |  |  |  |  | T | T | T |
| T | T |
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |
|
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | |
|
|
|
. | . | 30 | . | . | . | . | . | |
. | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|