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Job DescriptionP39334
Confidence99.86%DateThu Jan 5 11:59:26 GMT 2012
Rank68Aligned Residues178
% Identity17%Templatec2fd5A_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:transcriptional regulator; PDBTitle: the crystal structure of a transcriptional regulator from pseudomonas2 aeruginosa pao1
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.........40.........50.........60.........70.........80.........90
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Query Sequence  GRPRRFAPEQAISAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILRDDRPVG
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Template Sequence  SDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGE. LDPGLSGK
Template Known Secondary structure 

TTTS

TT

GGGGGGT
S
T.S
TTS
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   2.......10.........20.........30.........40.........50.........60.........70.. .......80
 
   91........100.........110.........120.........130.........140.........150.........160.........170
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Query Sequence  ECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQRAQCVTDFMSTVMSGLSAK
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Template Sequence  ERRALAAAFYLSRKHRDAQVDAGCPLPATLAEVARLPEGFREVLSRHVEIMVTSLA. . ESPEETDVALADLVLMIGGLAL
Template Known Secondary structure  S
TT
SSS

SGGGGGGS

..SSGGG
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   81........90.........100.........110.........120.........130...... ...140.........150........
 
   171........180.........190.
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Query Sequence  AREGHSIEQLCATAAMAGEAI
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Template Sequence  ARALGPGELSDRVLRAAKQAV
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   159160.........170.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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