Job Description P39334 Confidence 99.91% Date Thu Jan 5 11:59:26 GMT 2012 Rank 10 Aligned Residues 190 % Identity 15% Template c2f07A_ PDB info PDB header:transcription Chain: A: PDB Molecule:yvdt; PDBTitle: crystal structure of yvdt from bacillus subtilis Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	V	P	G	R	P	R	R	F	A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	T	M	P	K	Q	T	S	G	K	Y	E	K	I	L	Q	A	A	I	E	V	I	S	E	K	G	L	D	K	A	S	I	S	D	I	V	K	K	A	G	T	A	Q	G	T	F	Y	L	Y	F	S	S	K	N	A	L	I	P	A	I	A	E	N	L	L	T	H	T	L	D	Q	I	K	G	R	L	H	G	D
Template Known Secondary structure											S																		T	T	T											T	S										S	S	S	T	T																				T			S
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																															.																																	.	.	.
Query SS confidence																															.																																	.	.	.
Query Sequence		R	P	V	G	E	C	L	V	E	V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	G	C	M	V	.	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	.	.	.	R	H	P	Q	R	A	Q	C	V	T	D	F	M	S	T
Query Conservation																															.																																	.	.	.
Alig confidence																															.																																	.	.	.
Template Conservation
Template Sequence		E	D	F	W	T	V	L	D	I	L	I	D	E	T	F	L	I	T	E	R	H	K	D	I	I	V	L	C	Y	S	G	L	A	I	D	H	S	M	E	K	W	E	T	I	Y	Q	P	Y	Y	S	W	L	E	K	I	I	N	K	A	I	A	N	H	E	V	T	E	G	I	N	S	K	W	T	A	R	T	I	I	N
Template Known Secondary structure																																				T	T																										T	T	S	B		T	T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		V	M	S	G	L	S	A	K	A	R	E	G	.	H	S	I	E	Q	L	C	A	T	A	A	M	A	G	E	A	I	K	T	I	L	E
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		L	V	E	N	T	A	E	R	F	Y	I	G	F	E	Q	D	E	N	V	E	V	Y	K	K	E	I	F	T	F	L	K	R	S	L	G
Template Known Secondary structure												T	S				S	S																		B
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions