Job Description P39334 Confidence 99.87% Date Thu Jan 5 11:59:26 GMT 2012 Rank 46 Aligned Residues 178 % Identity 15% Template c1zkgB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of transcriptional regulator, tetr family (tm1030)2 from thermotoga maritima at 2.30 a resolution Resolution 2.30 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		F	A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	.	.	R	D	D	R	P	V	G	E	C	L
Query Conservation																																																																						.	.
Alig confidence																																																																						.	.
Template Conservation
Template Sequence		S	K	R	D	A	I	L	K	A	A	V	E	V	F	G	K	K	G	Y	D	R	A	T	T	D	E	I	A	E	K	A	G	V	A	K	G	L	I	F	H	Y	F	K	N	K	E	E	L	Y	Y	Q	A	Y	X	S	V	T	E	K	L	Q	K	E	F	E	N	F	L	X	K	N	R	N	R	D	I	F	D	F	X
Template Known Secondary structure																																	T	S									S	S	S																												T	T	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.
Query Sequence		V	E	V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	G	C	M	V	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	R	.	.	.	.	.	.	.	H	P	Q	R	A	Q	C	V	T	D	F	M	S	T	V	M	S	G
Query Conservation																																																									.	.	.	.	.	.	.
Alig confidence																				.	.																																				.	.	.	.	.	.	.
Template Conservation																				.	.
Template Sequence		E	R	W	I	E	K	K	L	E	Y	S	A	S	H	P	E	E	A	.	.	D	F	L	I	T	L	V	S	V	D	E	G	L	R	K	R	I	L	L	D	L	E	K	S	Q	R	V	F	F	D	F	V	R	E	K	L	K	D	L	D	L	A	E	D	V	T	E	E	I	A	L	K	F	L	X	W	F	F	S	G
Template Known Secondary structure																				.	.				G	G	G	T	T	S																												T	T	S		B		T	T
Template Predicted Secondary structure																				.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		167	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		L	S	.	.	A	K	A	R	E	G	H	S	I	E	Q	L	C	A	T	A	A	M	A	G	E	A	I	K	T	I	L
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		F	E	E	V	Y	L	R	T	Y	Q	G	K	P	E	L	L	K	R	D	X	N	T	L	V	E	E	V	K	V	X	L
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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