Job Description P39334 Confidence 99.85% Date Thu Jan 5 11:59:26 GMT 2012 Rank 83 Aligned Residues 181 % Identity 16% Template c1t33B_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family); PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2 Resolution 2.20 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		R	R	F	A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																									.																																																.	.	.	.	.	.	.	.	.
Template Conservation																									.
Template Sequence		G	E	Q	A	K	S	Q	L	I	A	A	A	L	A	Q	F	G	E	Y	G	L	H	A	.	T	T	R	D	I	A	A	L	A	G	Q	N	I	A	A	I	T	Y	Y	F	G	S	K	E	D	L	Y	L	A	C	A	Q	W	I	A	D	F	L	G	E	K	F	R	P	H	A	E	K	A	E	R	L	F	S	Q	P
Template Known Secondary structure																					G	G	G	S	.										T	S		T							T		S																															T	T	S	S
Template Predicted Secondary structure																									.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
			85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																															.	.																																		.	.
Query SS confidence		.																															.	.																																		.	.
Query Sequence		.	D	D	R	P	V	G	E	C	L	V	E	V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	G	C	M	.	.	V	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	.	.	R	H	P	Q	R	A	Q	C	V	T	D	F
Query Conservation		.																															.	.																																		.	.
Alig confidence		.																															.	.																																		.	.
Template Conservation
Template Sequence		A	P	D	R	D	A	I	R	E	L	I	L	L	A	C	K	N	M	I	M	L	L	T	Q	E	D	T	V	N	L	S	K	F	I	S	R	E	Q	L	S	P	T	S	A	Y	Q	L	V	H	E	Q	V	I	D	P	L	H	T	H	L	T	R	L	V	A	A	Y	T	G	C	D	A	N	D	T	R	M	I	L	H
Template Known Secondary structure		S																					T	T		G	G	G													S												T																	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.												.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	T	V	M	S	G	L	S	A	K	A	R	E	.	.	.	.	.	.	.	.	.	.	.	G	H	S	I	E	Q	L	C	A	T	A	A	M	A	G	E	A	I	K	T	I	L
Query Conservation																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	H	A	L	L	G	E	V	L	A	F	R	L	G	K	E	T	I	L	L	R	T	G	W	P	Q	F	D	E	E	K	A	E	L	I	Y	Q	T	V	T	C	H	I	D	L	I	L
Template Known Secondary structure															T									T		S	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions