Job Description P39334 Confidence 99.90% Date Thu Jan 5 11:59:26 GMT 2012 Rank 18 Aligned Residues 176 % Identity 13% Template c1sgmA_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf; PDBTitle: crystal structure of hypothetical protein yxaf Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	.	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	D	D	R	P	V	G	E	C	L	V	E
Query Conservation																																													.
Alig confidence																																													.
Template Conservation
Template Sequence		S	R	E	K	I	L	H	T	A	S	R	L	S	Q	L	Q	G	Y	H	A	T	G	L	N	Q	I	V	K	E	S	G	A	P	K	G	S	L	Y	H	F	F	P	N	G	K	E	E	L	A	I	E	A	V	T	Y	T	G	K	I	V	E	H	L	I	Q	Q	S	M	D	E	S	S	D	P	V	E	A	I	Q	L
Template Known Secondary structure																			T	T	T														S						S	T	T	T																											T		S	S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																.	.	.																																											.	.
Query SS confidence																.	.	.																																											.	.
Query Sequence		V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	.	.	.	C	A	G	C	M	V	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	R	H	P	Q	.	.	R	A	Q	C	V	T	D	F	M	S	T	V	M	S	G	L	S	A	K
Query Conservation																.	.	.																																											.	.
Alig confidence																.	.	.																																											.	.
Template Conservation
Template Sequence		F	I	K	K	T	A	S	Q	F	D	N	T	E	S	I	K	G	I	P	V	G	L	L	A	S	E	T	A	L	I	S	E	P	L	R	T	V	C	M	K	V	F	K	S	W	E	A	V	F	A	R	K	L	M	E	N	G	F	A	E	E	E	A	N	Q	L	G	T	L	I	N	S	M	I	E	G	G	I	M	L
Template Known Secondary structure									T	T	S	S	G	G	G					T	T								T	T	S																										T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	E	G	H	S	I	E	Q	L	C	A	T	A	A	M	A	G	E	A	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	T	N	K	D	K	T	P	L	L	L	I	A	E	Q	I	P	V	L	V	R
Template Known Secondary structure						T		S								T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions