Job Description P39334 Confidence 99.90% Date Thu Jan 5 11:59:26 GMT 2012 Rank 24 Aligned Residues 190 % Identity 16% Template c1rktA_ PDB info PDB header:transcription Chain: A: PDB Molecule:protein yfir; PDBTitle: crystal structure of yfir, a putative transcriptional regulator from2 bacillus subtilis Resolution 1.95 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	R	V	P	G	R	P	R	R	F	A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	D
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		S	P	K	V	T	K	E	H	K	D	K	R	Q	A	E	I	L	E	A	A	K	T	V	F	K	R	K	G	F	E	L	T	T	X	K	D	V	V	E	E	S	G	F	S	R	G	G	V	Y	L	Y	F	S	S	T	E	E	X	F	R	R	I	I	E	T	G	L	D	E	G	L	R	K	L	D	K	S	A	E	.
Template Known Secondary structure				T	T																									S	T	T											T	S							T	T		S																									T	T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																.	.																																	.	.	.	.	.	.	.
Query SS confidence																																.	.																																	.	.	.	.	.	.	.
Query Sequence		D	R	P	V	G	E	C	L	V	E	V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	G	C	M	V	.	.	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	.	.	.	.	.	.	.	R	H	P	Q	R	A	Q	C	V
Query Conservation																																.	.																																	.	.	.	.	.	.	.
Alig confidence																																.	.																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	Q	S	V	W	A	S	I	S	S	Y	L	D	E	L	T	E	G	L	R	D	V	A	D	T	L	A	P	V	Q	F	E	Y	L	V	T	A	W	R	N	E	E	R	R	Q	Y	L	E	K	R	Y	D	L	F	V	E	R	F	S	R	L	L	Q	K	G	I	D	Q	G	E	F	Q	P	V	Q	P	L	A	T	I
Template Known Secondary structure		T	S																	T	T	T	G	G	G	S	S										G	G	G	G																													T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		T	D	F	M	S	T	V	M	S	G	L	S	A	K	A	R	E	G	H	S	I	.	E	Q	L	C	A	T	A	A	M	A	G	E	A	I	K	T	I	L	E
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		A	K	F	F	L	N	X	N	D	G	I	I	Q	N	A	L	Y	F	D	E	E	K	A	D	V	S	G	L	A	E	S	A	K	L	Y	L	K	T	V	L	Q
Template Known Secondary structure																			S																							T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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