Job Description P39334 Confidence 99.79% Date Thu Jan 5 11:59:26 GMT 2012 Rank 108 Aligned Residues 171 % Identity 16% Template c1bjzA_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:tetracycline repressor; PDBTitle: tetracycline chelated mg2+-ion initiates helix unwinding for tet2 repressor induction Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	A	P	E	Q	A	I	S	A	A	K	V	L	F	H	Q	K	G	F	D	A	V	S	V	A	E	V	T	D	Y	L	G	I	N	P	P	S	L	Y	A	A	F	G	S	K	A	G	L	F	S	R	V	L	N	E	Y	V	G	T	E	A	I	P	L	A	D	I	L	R	D	D	R	P	V	G	E	C	L	V
Query Conservation
Alig confidence																																																																	.	.
Template Conservation																																																																	.	.
Template Sequence		R	L	N	R	E	S	V	I	D	A	A	L	E	L	L	N	E	T	G	I	D	G	L	T	T	R	K	L	A	Q	K	L	G	I	E	Q	P	T	L	Y	W	H	V	K	N	K	R	A	L	L	D	A	L	A	V	E	I	L	A	R	H	H	D	.	.	Y	S	L	P	A	A	G	E	S	W	Q	S	F	L	R
Template Known Secondary structure			S	S																														T	S																													T	.	.	T	S	S			T	T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	L	K	E	A	A	R	R	Y	S	Q	N	G	G	C	A	G	C	M	V	L	E	G	I	H	S	H	D	P	Q	A	R	D	I	A	V	Q	Y	Y	H	A	A	E	T	T	I	Y	D	Y	I	A	R	R	H	P	Q	R	A	Q	C	V	T	D	F	M	S	T	V	M	S	G	L	S	A	K	A	R	E	G
Query Conservation
Alig confidence																							.	.	.																						.	.	.	.	.	.
Template Conservation																							.	.	.																						.	.	.	.	.	.
Template Sequence		N	N	A	M	S	F	R	R	A	L	L	R	Y	R	D	G	A	K	V	H	L	.	.	.	G	T	R	P	D	E	K	Q	Y	D	T	V	E	T	Q	L	R	F	M	T	E	.	.	.	.	.	.	N	G	F	S	L	R	D	G	L	Y	A	I	S	A	V	S	H	F	T	L	G	A	V	L	E	Q	Q	E	H
Template Known Secondary structure													T	S	T	T							.	.	.	T	S																				.	.	.	.	.	.	T	T
Template Predicted Secondary structure																							.	.	.																						.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		175	.	.																	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	L	C	A	T	A	A	M	A	G	E	A	I	K	T	I	L	E
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	P	P	L	L	R	E	A	L	Q	I	M	D	S	D	D	G	E	Q	A	F	L	H	G	L	E	S	L	I	R	G	F	E	V	Q	L	T
Template Known Secondary structure															T	T	S		S																				T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions